Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12604g00001 GTCGAACCGTGGACGTTTGAGCAATATCTTGGCGAAGCTGTTTTCATACCTGCAGGATGTCCACATCAAGTGAGAAATAGAAAGTCTTGCATAAAGGTGGCTATGGACTTCGTTTCGCCAGAGAATGTTCATGAGTGTGTTCGATTGACAGAGGAATTTCGCTTACTTCCAAAAAGCCATAGATCTAAGGAAGATAAATTAGAGATAAAGAAGATGGCACTCTATGCTGCTGATGTTGCTATTGCTGAAGCCACTGAACTTGTGGGAGCTAAATGA 276 0.4239 VEPWTFEQYLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVHECVRLTEEFRLLPKSHRSKEDKLEIKKMALYAADVAIAEATELVGAK 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12604g00001 91 SUPERFAMILY Clavaminate synthase-like 2 83 - -
Trme12604g00001 91 ProSiteProfiles JmjC domain profile. 1 54 IPR003347 -
Trme12604g00001 91 Pfam JmjC domain, hydroxylase 1 37 IPR003347 -
Trme12604g00001 91 Gene3D Cupin 1 63 - -
Trme12604g00001 91 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 88 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12604g00001 Trme-Chr12604 161 1177 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme12604g00001 JmjC 6.4e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12604g00001 K15601 - lang:109335468 174.096