Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12600g00001 ATGTCTGAAGATATTATCAAGCGTGCTTTCTCTTCTGTGGAGAATACATTTATGGAGTATGTTAAGAATACTTACCAAAACGATCAAACTCGTATTGAAGACGGTTCTTGTTGTATTGCTTCAATCATTTGGGGACGTACGTTGTATATTGCAAACCTTGGTGATTCTCGCGCGGTACTAGGTTCGAATGCGAGTACATTTAAAACACTCCATATTGAGCAGTTAACTAACGATCACAGTGTTAGTAACGAAGCTATTAGAGAAGAACTCCAGGCACGGAATCCATATGATTCTGAAGTTGTTATGTATTGTGAGGAAACATGGAATAAAGGCAACATAAAGGTAAATAGAAGCATTGGTTATGCTCATTTTAAGGACCATCCGATCAATTCATTGCGAAGGTTACCAGAAATTGAACAGATAACTCAAGTTTTAGTATCTGCAAAACCTGAATTACATTCAAGAAAAATTAGAAAGGGTGATAGGTTTCTCATACTTGCATCTCATGGATTTTGGAATTTCATGACCAATGAGAATGCAGCTAATATTGTAAACCGCAATCCCCGAGATGAAATTGCAAAAAGACTTTTGAGTGCTGCTCTAGAAAAGGCAACTGAAAAAAGAGGAGCGAAGGGTGTTTATGATGATATGATTATCATTGTTTTATTCTTCAGCGAAGGGTTGTCACAGAGGAAAGAGGAAGACACACCAAAGACGGTAGTGTTACATGAAGGGCCATCATATTTGAGTAATATAATCATGGCATCAGGAAAATCCGACCAATCTCGTCTGAGTCCCACTTCATCTATTCCAAATCCACGAGCTAGTGTGCCTACACTTACTCAA 846 0.3818 MSEDIIKRAFSSVENTFMEYVKNTYQNDQTRIEDGSCCIASIIWGRTLYIANLGDSRAVLGSNASTFKTLHIEQLTNDHSVSNEAIREELQARNPYDSEVVMYCEETWNKGNIKVNRSIGYAHFKDHPINSLRRLPEIEQITQVLVSAKPELHSRKIRKGDRFLILASHGFWNFMTNENAANIVNRNPRDEIAKRLLSAALEKATEKRGAKGVYDDMIIIVLFFSEGLSQRKEEDTPKTVVLHEGPSYLSNIIMASGKSDQSRLSPTSSIPNPRASVPTLTQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12600g00001 282 ProSiteProfiles PPM-type phosphatase domain profile. 1 224 IPR001932 -
Trme12600g00001 282 CDD PP2Cc 1 224 IPR001932 -
Trme12600g00001 282 Pfam Protein phosphatase 2C 14 207 IPR001932 -
Trme12600g00001 282 Gene3D - 2 236 IPR036457 -
Trme12600g00001 282 PANTHER PROTEIN PHOSPHATASE 5 222 IPR015655 GO:0004722|GO:0006470
Trme12600g00001 282 MobiDBLite consensus disorder prediction 257 282 - -
Trme12600g00001 282 SMART PP2C_4 2 222 IPR001932 -
Trme12600g00001 282 SUPERFAMILY PP2C-like 3 225 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12600g00001 Trme-Chr12600 53 1242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12600g00001 1 224 PP2C-type Phosphatase Gene Family AT3G55050 36.515 9.47e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12600g00001 K01102 - osa:9272700 175.252