Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme125945g00001 ATGGCCACCACCGGCGAACAACTTCCCTGCGACGCCGACGGCGTTTGCATGGTATGCAAAAACAAACCTCAAGAAACCGAAACTCTCAACTGCCGAACATGCGCATCACTCTGGCATGTTCCTTGTTTACCACAAGTTCCAACAACTATCCTCGATTGGGAATGTCCTGATTGTTCTACACCACTTCTTGTTAACGATAACACCGTCGCCGATGCTGTATCAGCACCGGTGCCGGTAACGGCTCCTTCTGTTGCCGGCGATCTCATTTCTGCTATACGTGCTATCGAAAATGACGCTTCACTTACCGATGT 311 0.5016 MATTGEQLPCDADGVCMVCKNKPQETETLNCRTCASLWHVPCLPQVPTTILDWECPDCSTPLLVNDNTVADAVSAPVPVTAPSVAGDLISAIRAIENDASLTDV 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme125945g00001 104 SUPERFAMILY FYVE/PHD zinc finger 9 60 IPR011011 -
Trme125945g00001 104 ProSitePatterns Zinc finger PHD-type signature. 16 58 IPR019786 -
Trme125945g00001 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme125945g00001 7 103 C2H2 Transcription Factor Family AT5G39550 44.444 4.91e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme125945g00001 K10638 - ini:109175934 110.538