Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12592g00001 ATGGAGTACAACCCTAATAAATCTGACCAAATAAGATGGAACTCAGATGATCTAGGTGGTCCTGGACAAGTTAGGTCTTATTCTTGTACCTTTTGCAAGAGAGGATTTTCAAATGCACAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAATCTTCCGAAGAAAATTCGCTTTCTTTGGACATCTCAACCAAGAACACGAATGATCCTGACCATGTTGATTTGGAACAGAATCATGAAACTCAAAGGGGAAAGTTTACAAAAGAATTTCCTCGTAGTTCTTCATATGTTGATATAAAGGGAGGTGGTGTTATGGCTCAAAGGATTGAAGAGAAGAAATGTGATATAGACCTTGAGCTTAGGTTAGGTTATGAGCCAATAGATTCATCGACATTGAGCACTCGATCGTTCTTTTGA 438 0.3881 MEYNPNKSDQIRWNSDDLGGPGQVRSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENSLSLDISTKNTNDPDHVDLEQNHETQRGKFTKEFPRSSSYVDIKGGGVMAQRIEEKKCDIDLELRLGYEPIDSSTLSTRSFF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12592g00001 145 Gene3D Classic Zinc Finger 19 93 - -
Trme12592g00001 145 MobiDBLite consensus disorder prediction 74 91 - -
Trme12592g00001 145 SUPERFAMILY beta-beta-alpha zinc fingers 25 53 IPR036236 -
Trme12592g00001 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Trme12592g00001 145 PANTHER OS07G0101800 PROTEIN 7 86 - -
Trme12592g00001 145 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Trme12592g00001 145 MobiDBLite consensus disorder prediction 47 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12592g00001 Trme-Chr12592 792 1229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12592g00001 23 138 C2H2 Transcription Factor Family AT3G53820 37.705 2.42e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme12592g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12592g00001 - - mtr:25498560 212.231