Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme125700g00001 GTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAAAATGGTTTATGTGACGTGGATAGCAATGGAGCTGCTTCCAGCAAAGCAACAAGTTCAAAAACTGCTGCAGGGAGCAGTAAGGGAAAAGGCGGAAGAGGAAAGGGGACACCTAAAGCTAGCTTGTCCAGCAGAATAACTGATGATCTTTGGTCTTGTGAGCAATGTACCTATGCAAATGCCAGATCGGCCACCGCATGCAATATGTGCAATCGACAGCGTCGATGA 267 0.4569 VTRNYFENLVRALENGLCDVDSNGAASSKATSSKTAAGSSKGKGGRGKGTPKASLSSRITDDLWSCEQCTYANARSATACNMCNRQRR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme125700g00001 88 SUPERFAMILY Ran binding protein zinc finger-like 61 87 IPR036443 -
Trme125700g00001 88 MobiDBLite consensus disorder prediction 20 56 - -
Trme125700g00001 88 ProSiteProfiles Zinc finger RanBP2 type profile. 60 88 IPR001876 -
Trme125700g00001 88 MobiDBLite consensus disorder prediction 21 39 - -
Trme125700g00001 88 SMART zf_4 62 86 IPR001876 -
Trme125700g00001 88 Gene3D - 58 88 - -
Trme125700g00001 88 ProSitePatterns Zinc finger RanBP2-type signature. 64 83 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme125700g00001 Trme-Chr125700 133 399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme125700g00001 1 87 ARIADNE family AT1G65430 45.977 2.84e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme125700g00001 K11968 - vum:124843329 112.849