Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1256528g00001 ATGACATTCCGGAACACAGCTGGACCAGTAAACCATCAAGCTGTGGCATTGCGCGTGGATTCAGACCAATCTGCATTCTTTAGGTGTAGCATAGAAGGGCACCAAGACACGCTTTACGCACACTCGCTAAGGCAATTCTACCGTGAATGCGAAATCTATGGTA 163 0.4785 MTFRNTAGPVNHQAVALRVDSDQSAFFRCSIEGHQDTLYAHSLRQFYRECEIYG 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1256528g00001 54 Pfam Pectinesterase 1 54 IPR000070 GO:0030599|GO:0042545
Trme1256528g00001 54 SUPERFAMILY Pectin lyase-like 1 54 IPR011050 -
Trme1256528g00001 54 Gene3D - 1 54 IPR012334 -
Trme1256528g00001 54 PANTHER PECTINESTERASE 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1256528g00001 Trme-Chr1256528 1 163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1256528g00001 1 54 Carbohydrate Esterase AT3G05620 87.037 4.44e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1256528g00001 K01051 - gmx:100810565 113.235