Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1255g00001 ATGTGTGACACTATACTTTCCTGTGCTCGTGATCACTTACTTCCACTAGCCCGTGATCATTTGCTTCCAATATTAAGGGAAGCAGTGGATATGATTAGAGGTGTCCCAAAAGAAATTGCAGAAATGAAAGATGAACTTGAAAGCATTGAAGAATTCATCAACAAAGCAGATAGAATGGTTGATGATGCTGAAGATGACAAAACAAGTCACCAAATCAAAGCAAGAATCAAGCAACTAATAGAAGCATCCTTTCACATAGAAGATATCATTGATGAATATATGATCTGCGAGGAACAACCTACTGGATGTACTGCTGGTGCTAACTTAGTCAAAACTATGATTCTTCGTCTCGAAATAGCCTACAAGATTCAGAACATCAAATCCCAAATTAGTGAAATGAAAGATGCAAGTTCTGAAAAAGATCATGGCTTCCAGTTCCAAATTCAATCTTATTCAGAACATGGATCAAGCAGTTCTGCAGCCAACTCTAACGCTGCATTATTGCAGAATCTTCGAAGGGCTCCATTTTACATGGATGAAGCTGATGTCGTAGGCTTTGAAGTGCCGAGAGACATATTGATTGATTTGTTGTTAGAGGGAAGACCGGAGCTCACTGTCGTCTCTGTTGTTGGAATGGGAGGACAGGGAAAAACCACTCTAGCCAAGAAAGTTTTTGACAACAAGAAGATTGTTAAACACTTTCACTGTCATGTATGGATTACCGTGTCTCAATCATACGATATAGAAGGATTGCTGAGGGAGTTGTTGCGCGAGATTTACAAACAACAAGGAGTCAATCCTCCTCAGAGTATTCATCAAATGAATCGAGAGTCGTTAGTTGATGAAGTAAGAAACTACTTGCAGGAAAAAAGGTATGTTGTAGTGTTTGATGATGTATGGAATTTAAATTTTTGGGATGATATTGAATTTGCTATGATTGATAACAAAAATGGTAGTAAGATTTTAATCACAACAAGGAAGATGAATGTTGTGAATGCTTGTAAGAGATCTTCTTTTGTTGAAGTGCATGAACTAAAAGGTTTAACTGAAGAACAATCTTTGGAGTTGTTCAATAAGAAGGCATTCCGCGACTTGAATGGACGTTGTCCGGAAAATCTTGTTGAAATATCTTCTAAAATTGTTGAAAAATGCAATGGATTACCACTAGCAATTGTAGTCACGGGGGGTCTTTTATCTTTCCAAGATAGAAATACATTTACGTGGTATAAGTTTAGTGAAAATCTAAACTCAGAGTTAAAGGAAGATTCCAAGATAAAAAGAATTTTAGGTCTTAGTTACCATGATTTGCCTTACAATCTCAAGTCATGTTTGTTGTATTTTGGATTATATCCTGAAGATTGTGTAGTTCCTTCGAAGATTTTGATTTGGCGATGGGTGGCTGAAGGGTTCTTGAAAGAGGAAAGGGGAAAGACTTTGGAAGAGGTTGCAGAAGGATATTTAACAGAATTGATCCGTAGAAGTTTGGTGCAAGTAGTTTCAATTAGAAATGAAAGAGTAAAAAGTTGCCGTGTTCATGATATGGTGCATGCAATGATCCTTGAAAAATGTGAGGATTTATGCTTTTGCAAGTATATTGGTAAGAACGAACAATCATCTTTAATTGGAATGGTTCGACGTCTATCAATAGAAAGTGGTGCTGATAATATAATGAAAAGTATTGAAAACTCACATGTTCGATCACTACTTGTTCTCAGTCCTAAAACATTACCTGAATCCTTTGCAAGGAGAATCCCTACAAAATACAAGAGGTTGAAGGTGCTTGCTTTGGAGTATGCTGGATTGCTTGAAGTTCCTAAAGATTTGGGAAGTTTGAGCCACTTGAAGTATTTTAGGTTTCGGGACACACATCCAGAAACTAGACGTTATACACTACCAAAATCCATTTGCATGCTCGAGAGCCTAGAGACCTTGGATTTGACAGGTACAACGTTCTATGCTATGCCGAAGGAGATTTGCAAGCTCAAAAAGTTGCGTCATTTTCTAGGCTTGAGTATGTCTTTGATTCAATTGAAGGATGGTATTGCGG 2047 0.3747 MCDTILSCARDHLLPLARDHLLPILREAVDMIRGVPKEIAEMKDELESIEEFINKADRMVDDAEDDKTSHQIKARIKQLIEASFHIEDIIDEYMICEEQPTGCTAGANLVKTMILRLEIAYKIQNIKSQISEMKDASSEKDHGFQFQIQSYSEHGSSSSAANSNAALLQNLRRAPFYMDEADVVGFEVPRDILIDLLLEGRPELTVVSVVGMGGQGKTTLAKKVFDNKKIVKHFHCHVWITVSQSYDIEGLLRELLREIYKQQGVNPPQSIHQMNRESLVDEVRNYLQEKRYVVVFDDVWNLNFWDDIEFAMIDNKNGSKILITTRKMNVVNACKRSSFVEVHELKGLTEEQSLELFNKKAFRDLNGRCPENLVEISSKIVEKCNGLPLAIVVTGGLLSFQDRNTFTWYKFSENLNSELKEDSKIKRILGLSYHDLPYNLKSCLLYFGLYPEDCVVPSKILIWRWVAEGFLKEERGKTLEEVAEGYLTELIRRSLVQVVSIRNERVKSCRVHDMVHAMILEKCEDLCFCKYIGKNEQSSLIGMVRRLSIESGADNIMKSIENSHVRSLLVLSPKTLPESFARRIPTKYKRLKVLALEYAGLLEVPKDLGSLSHLKYFRFRDTHPETRRYTLPKSICMLESLETLDLTGTTFYAMPKEICKLKKLRHFLGLSMSLIQLKDGIA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1255g00001 682 Gene3D - 433 523 IPR036388 -
Trme1255g00001 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 447 IPR027417 -
Trme1255g00001 682 Gene3D - 176 342 IPR027417 -
Trme1255g00001 682 Coils Coil 39 66 - -
Trme1255g00001 682 PRINTS Disease resistance protein signature 286 300 - -
Trme1255g00001 682 PRINTS Disease resistance protein signature 384 398 - -
Trme1255g00001 682 PRINTS Disease resistance protein signature 206 221 - -
Trme1255g00001 682 PRINTS Disease resistance protein signature 636 652 - -
Trme1255g00001 682 CDD RX-CC_like 19 135 IPR038005 -
Trme1255g00001 682 FunFam Probable disease resistance protein At1g61300 168 338 - -
Trme1255g00001 682 Gene3D - 16 136 - -
Trme1255g00001 682 Pfam NB-ARC domain 193 429 IPR002182 GO:0043531
Trme1255g00001 682 Gene3D Ribonuclease Inhibitor 549 681 IPR032675 -
Trme1255g00001 682 Pfam Rx N-terminal domain 20 100 IPR041118 -
Trme1255g00001 682 SUPERFAMILY L domain-like 510 667 - -
Trme1255g00001 682 PANTHER DISEASE RESISTANCE PROTEIN RP 40 670 IPR044974 GO:0006952
Trme1255g00001 682 Gene3D - 347 432 IPR042197 -
Trme1255g00001 682 FunFam Probable disease resistance protein At1g63360 433 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1255g00001 Trme-Chr1255 227 2273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1255g00001 194 395 WRKY Transcription Factor Family AT5G45050 28.079 1.92e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1255g00001 K13457 - mtr:25489074 635.95