Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12557g00001 AACCGTCTTCGCCGTCGTACTCAGCTAGTTTTCTTCACCGATAATCAACCAACAACCACCGTGGTTTCTTCCGCCGTTACTTCACGTGGTCTTGATGCTTCTGTTATCGCTTCGCTTCCGTTATTCTTCTACGATCCGAAAACTCAACCGGAGAATTCATCGGAATGTGCTGTTTGTTTATCGGARTTTGAATCCGGTGAAACGGGTCGGGTTTTACCGAAATGTAAACATAGTTTTCATATCGAGTGTATTGATATGTGGTTTCATTCTCATTCCACGTGTCCACTTTGTCGTGCAGCGGTGGAACCCGCTTCCGAATTTCAAACCCGACCCGAATTTGTTATAACTGTTTGTGAAACGGAAAGTGGGTCGAGTTCGAATTCCGGTTCGGGTTTTGAAGATGAGAATGAGAACCGAACCGGTAAAGAGGTTTGTTCGAGTTCGGTTGGGTTAAGGAGAAAACCGTCTTTTACGGGAGTGACAATTGAGGTACCTTCGAGGAACGAGTTGTGTTGTGACTCGCCGTCGTCGACTCAGTCGTCGTTTCGGTCACCGATGAGTCGGATGTTGTCGTTTAAGAGGATTCTTAGTATGGATTGGAAAGGGAGTGTTTCTCCGTCGTCGTGTGGTGGTGGTGGCGGTGGTGGTTGTAGCTCGGTGGCTGAGTTAAAAGTAGAACAAGGTGGACGAGTTGAGACTCAGTGA 705 0.4723 NRLRRRTQLVFFTDNQPTTTVVSSAVTSRGLDASVIASLPLFFYDPKTQPENSSECAVCLSEFESGETGRVLPKCKHSFHIECIDMWFHSHSTCPLCRAAVEPASEFQTRPEFVITVCETESGSSSNSGSGFEDENENRTGKEVCSSSVGLRRKPSFTGVTIEVPSRNELCCDSPSSTQSSFRSPMSRMLSFKRILSMDWKGSVSPSSCGGGGGGGCSSVAELKVEQGGRVETQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12557g00001 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 107 IPR013083 -
Trme12557g00001 234 Pfam Ring finger domain 55 98 IPR001841 -
Trme12557g00001 234 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Trme12557g00001 234 MobiDBLite consensus disorder prediction 207 234 - -
Trme12557g00001 234 FunFam RING-H2 finger protein ATL3 22 103 - -
Trme12557g00001 234 SMART ring_2 56 97 IPR001841 -
Trme12557g00001 234 CDD RING-H2_EL5-like 55 98 - -
Trme12557g00001 234 MobiDBLite consensus disorder prediction 121 147 - -
Trme12557g00001 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 113 - -
Trme12557g00001 234 SUPERFAMILY RING/U-box 37 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12557g00001 Trme-Chr12557 3 707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12557g00001 9 229 Rapid Response to Elicitors AT3G16720 43.460 2.12e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12557g00001 - - lja:Lj6g3v1468220.1 242.662