Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme125578g00001 ATGGTAGAGGTTTACTTGCATAAGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGCTTGGGAAATAAAGGGTTTTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGCAACACATGTAGTTGGATTGGATGCGATGTTTGTTCACACTGGTGCCATGCTGTTTGTGGCATCCAGAAAAAGCTCATCAAACCAGGACCAAGCTTGAAGGGTCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCGGAGATGTTTGGATTTGTTAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGAGTTGAAACTTTGTTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGAAAGGAATTGCATTTTAAAACTGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTGCAATTACATCGTGCAATTTTTCAACT 532 0.3985 MVEVYLHKRCRNVTCKSLLPVDDCDCKICLGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGVETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKIVSPSDACNYIVQFFN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme125578g00001 177 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 47 67 IPR004082 -
Trme125578g00001 177 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1 22 IPR004082 -
Trme125578g00001 177 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 120 139 IPR004082 -
Trme125578g00001 177 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 177 IPR004082 -
Trme125578g00001 177 Pfam PHD - plant homeodomain finger protein 10 134 IPR032881 -
Trme125578g00001 177 CDD PHD_OBE1_like 40 99 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme125578g00001 Trme-Chr125578 49 580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme125578g00001 10 162 PHD Gene Family AT5G57380 24.837 1.26e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme125578g00001 - - gmx:100820216 355.14