Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme125521g00001 ATGAGCAATGTTCAGATATCTGATAACACGCCAAGTGCACCGCTGGCACGTGCACAGCCAGTACGTGTAATGGCACTTTCTCCAGTAATAACACATTCCTATTCAGCTTTAAATGAAGAGAAGAAAGAAGAGTTTTATGGTCATACTAGTCATAATTCCTTTTCAGGTTTTGAACATTCTTATTCTGGTTTGGGGGATTCACCAAACTTTTCGGATTATTCTGGTGGTTCATTTGATGATTCAGTTCACAACCAAAGTTTGCAGATTGTTNNNNNNNNGGGTAAAGGGTCGTTGAAAGTTTTGCTCTTGCATGGTAATTTAGATATATGGGTTCATGGAGCTAAGAATCTTCCAAATATGGACAAGTTTCATAAAACTTTAGGTGATGTGTTTGGTAAGGGATCAGTGAGTAGGAAGATTACTAGTGATCCTTATGTGTCGATTTCTTTGACAAATGCTGTAGTTGGTAGGACATTTGTTATTAGTAATAGTGAAGATCCTGTTTGGGAGCAGCATTTTTTTGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTTGTTGTTAAGGATAGTGATGTGGTA 582 0.3763 MSNVQISDNTPSAPLARAQPVRVMALSPVITHSYSALNEEKKEEFYGHTSHNSFSGFEHSYSGLGDSPNFSDYSGGSFDDSVHNQSLQIVXXXGKGSLKVLLLHGNLDIWVHGAKNLPNMDKFHKTLGDVFGKGSVSRKITSDPYVSISLTNAVVGRTFVISNSEDPVWEQHFFVPVAHHAAEVHFVVKDSDVV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme125521g00001 194 Gene3D C2 domain 100 194 IPR035892 -
Trme125521g00001 194 ProSiteProfiles C2 domain profile. 94 194 IPR000008 -
Trme125521g00001 194 Pfam C2 domain 105 193 IPR000008 -
Trme125521g00001 194 PANTHER PHOSPHOLIPASE D 97 194 IPR015679 -
Trme125521g00001 194 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 103 193 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme125521g00001 Trme-Chr125521 1 582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme125521g00001 80 194 Phospholipase D Gene Family (Wang group) AT2G42010 69.421 6.10e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme125521g00001 K01115 - gmx:100801286 222.246