Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme125290g00001 ATGCCTGCTGATAGTGGATATCCTGCTTACCTTGCTGCACGTTTAGCCTCTTTCTATGAACGTGCTGGGAAAGTAAAATGTCTTGGAGGTCCTGAACGGACAGGTAGTGTAACAATTGTTGGTGCTGTTTCTCCACCTGGAGGAGATTTCTCAGATCCCGTGACATCTGCAACCCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCACAGAGGAAGCATTTTCCTTCTGTTAACTGGCTTATATCTTATTCAAAGTACTCGACGGTATGTCCAAGAGTTGTTGTCTGTGTAACTCATGTTTTCTCTTAA 321 0.4393 MPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTVCPRVVVCVTHVFS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme125290g00001 106 ProSitePatterns ATP synthase alpha and beta subunits signature. 79 88 IPR020003 GO:0005524
Trme125290g00001 106 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 88 IPR000194 GO:0005524
Trme125290g00001 106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 91 IPR027417 -
Trme125290g00001 106 Gene3D - 1 98 - -
Trme125290g00001 106 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 1 93 IPR022878 GO:0046034|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme125290g00001 Trme-Chr125290 52 544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme125290g00001 1 92 Primary Pumps ATPases(2) AT1G78900 98.913 2.67e-61 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme125290g00001 K02145 - ming:122059777 184.496