Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12525g00001 GCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAG 258 0.3876 ASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12525g00001 86 SMART rrm1_1 20 86 IPR000504 GO:0003723
Trme12525g00001 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 86 IPR000504 GO:0003723
Trme12525g00001 86 Gene3D - 16 86 IPR012677 -
Trme12525g00001 86 PANTHER RNA BINDING PROTEIN 9 83 - -
Trme12525g00001 86 SUPERFAMILY RNA-binding domain, RBD 15 82 IPR035979 GO:0003676
Trme12525g00001 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12525g00001 Trme-Chr12525 239 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12525g00001 5 82 Eukaryotic Initiation Factors Gene Family AT1G71770 29.268 2.56e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12525g00001 K13207 - gmx:100776362 169.474