Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12523g00002 ATGCTTCAACAGACTTTGATGGCTTATGCTGAGGCAGTTGAACAGAACAATCTACCTCTAGCGGAAGAAATTGCCAAACCGATCAAATACCTAGCTGCATTACAAAACTCCGCTACGAGTAAAGTTGCTACCTATTTAGCCGAAGCTCTCGCTCAGCGAATCCACGGAATACAGTGGCAGAAGCTTATGCGGGAGCTTGCCTTGCGTCCCGGTGGTCCTCATGCCTTTCGTCTCACCGGAGTAGGACCTCCGGCTTCCGATAACTCCAATCACCTCCATCAGGCTGGTTGGAAGCTTACTCAGCTTGCACAGAGGATTGGTGTTGAGTTTGAGTATCGCCGCGTTGTTGTTGATAGTCTCGCTGATCTAGAAGCTTCCATGCTTGAACTCCGTTCGTCGGAGACTGTCGCTGTTAACTCTGTTTTTGAACTTCATAAACTTAACGCGCGTCCCGGCGCGCTTGAGAGAGTATTTTCTGTTATCCGTCAGATTCAGCCGGAGATTGTAACCATCGTTGAACAAGAAGCGAATCACAACGGACCGAGTTTCCTCGACCGGTTTACCGAGTCGCTGTACTATTATTTGGCCCTTTTTGACTCGTTGGAGAGTTCGTTGGCTGAACCGCAGGACAATGCTATGTCGGAGGTGTTAGTTGATGGTCGCTAG 666 0.4925 MLQQTLMAYAEAVEQNNLPLAEEIAKPIKYLAALQNSATSKVATYLAEALAQRIHGIQWQKLMRELALRPGGPHAFRLTGVGPPASDNSNHLHQAGWKLTQLAQRIGVEFEYRRVVVDSLADLEASMLELRSSETVAVNSVFELHKLNARPGALERVFSVIRQIQPEIVTIVEQEANHNGPSFLDRFTESLYYYLALFDSLESSLAEPQDNAMSEVLVDGR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12523g00002 221 ProSiteProfiles GRAS family profile. 1 221 IPR005202 -
Trme12523g00002 221 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 55 IPR005202 -
Trme12523g00002 221 Pfam GRAS domain family 55 212 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12523g00002 Trme-Chr12523 735 1560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12523g00002 2 216 GRAS Transcription Factor Family AT2G01570 51.636 5.47e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme12523g00002 GRAS 5.5e-52 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12523g00002 K14494 - qsa:O6P43_032550 258.07