Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1250g00001 ATGTCACCTGATGAAACAAAAACCTCAAAATCTCCAAAAGACAAAGACAACAACCAACAAGGTTCTGGTGGTGGTGGTGGTAAGAAAACATGTTCATCATCTTCAACTTCAACAACAAAACCACCACATGAACAAAACATGAAGTGTCCAAGATGTGATTCACCAAACACAAAATTCTGCTACTACAACAACTATAGCTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACTAAAGGTGGAGCTTTACGCAACGTTCCGATCGGCGGCGGATGTAGAAAAAACAAGAAAATGAGACCATCATCATCATCATCAAGATTCTCTTGTGATAATTCAAAAGACTCTGCTTCTTCTTCAGAGCTTGTTGGTGGTTTRAAATTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCATCTTGGTACTGGTTTACCTTTTCCAAGGCTTCAACTTCAACATCAACAAAATCATCATAATCTTTCTCCAATATTTAACCAGTTTTCATCTTTTGGAGAAACTTCTTCTGCTATGAATCATAATAATTACCCTGCTTCTTCAAATTCTATTGCTGGTTCTGCTATGAATTTTCCTTTTTCAGTTGGAAATAATAATAATTATAATGGTGCAATTCAAGGGATGAGCTCAATGAATATTCATAGTAACGTTGCTTCTTCTATTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCTATGCTGTTTGGTGGTGGAGAAAATCAGCAGAAAGAAAATAATCAGACAGAGAAACCACTGCAACCTATTTTGTTTCAAAATCTTGAGGTTACAAAGCAGCAAGATGGTGGAAATTTTTCTGTTGGAAATTCAAGAAGAGAAAGTATAAATGGTGGGGATACACCAACTGAGTGGTTTTTTGGTAATTCTTATGGTTCTGTTGCTGCTACACCAACTGCTAGTGGCGGCGGTGGTGGTGGTGGACATGATAGTGGAAGCAACTGGAATGGTGGTGGTGGTGGCGGTGTTCATGGTTGGAGTGATGTGCAGCAGCAATATAGTGCTTTGCCCTAG 1083 0.3832 MSPDETKTSKSPKDKDNNQQGSGGGGGKKTCSSSSTSTTKPPHEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMRPSSSSSRFSCDNSKDSASSSELVGGLKFLHSLSSPSMDFHLGTGLPFPRLQLQHQQNHHNLSPIFNQFSSFGETSSAMNHNNYPASSNSIAGSAMNFPFSVGNNNNYNGAIQGMSSMNIHSNVASSIESLSSMNQDLHWKLQQQRLSMLFGGGENQQKENNQTEKPLQPILFQNLEVTKQQDGGNFSVGNSRRESINGGDTPTEWFFGNSYGSVAATPTASGGGGGGGHDSGSNWNGGGGGGVHGWSDVQQQYSALP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1250g00001 360 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
Trme1250g00001 360 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Trme1250g00001 360 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Trme1250g00001 360 MobiDBLite consensus disorder prediction 92 120 - -
Trme1250g00001 360 MobiDBLite consensus disorder prediction 101 120 - -
Trme1250g00001 360 MobiDBLite consensus disorder prediction 1 48 - -
Trme1250g00001 360 MobiDBLite consensus disorder prediction 15 44 - -
Trme1250g00001 360 MobiDBLite consensus disorder prediction 321 360 - -
Trme1250g00001 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 253 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1250g00001 Trme-Chr1250 1140 2222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1250g00001 33 360 C2C2-Dof Transcription Factor Family AT5G65590 41.420 2.39e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme1250g00001 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1250g00001 - - gmx:100780729 376.326