Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1249550g00001 AAATCCACGAGGATTTGGTTAGGAACATATCCAACACCTGAAATGGCGGCACGTGCACACGACGTTGCTGCTTTGGCACTTCATGGAAAATCAGCTTGTCTTAACTTTGCTGACTCAGCTTGGCTGTTGCGGTTGCCGGCGTCGAATGATCCGAAGGAGATTAGGAAAATGGCGGCCGAAGCTGCTTTGGCATTTGCTGTTGAAGATGG 209 0.4976 KSTRIWLGTYPTPEMAARAHDVAALALHGKSACLNFADSAWLLRLPASNDPKEIRKMAAEAALAFAVEDG 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1249550g00001 70 Gene3D AP2/ERF domain 1 38 IPR036955 GO:0003700|GO:0006355
Trme1249550g00001 70 SUPERFAMILY DNA-binding domain 2 39 IPR016177 GO:0003677
Trme1249550g00001 70 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 66 IPR045277 GO:0003700
Trme1249550g00001 70 SMART rav1_2 1 43 IPR001471 GO:0003700|GO:0006355
Trme1249550g00001 70 CDD AP2 3 39 IPR001471 GO:0003700|GO:0006355
Trme1249550g00001 70 ProSiteProfiles AP2/ERF domain profile. 1 37 IPR001471 GO:0003700|GO:0006355
Trme1249550g00001 70 Pfam AP2 domain 2 29 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1249550g00001 Trme-Chr1249550 2 210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1249550g00001 1 68 AP2-EREBP Transcription Factor Family AT5G51990 73.529 2.29e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme1249550g00001 AP2 8.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1249550g00001 - K09286 pvu:PHAVU_003G212800g 101.679