Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1249242g00001 GGTGACGGAAGCTTCGGTATGGTCTACAAAGCTCATCTCTCAACCGGCGTCGACGTCGCCGTAAAAAAACTCTCCCCCGACGCCTTCCAAGGATTCCGGGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTTAGCCACCGCAACATCGTTAAAATCTTCGGTTATTGGGCTTCTGGACCTGAACGGTTACTCGTTTATGA 203 0.5222 GDGSFGMVYKAHLSTGVDVAVKKLSPDAFQGFREFAAEMETLSKLSHRNIVKIFGYWASGPERLLVY 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1249242g00001 67 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 67 - -
Trme1249242g00001 67 SUPERFAMILY Protein kinase-like (PK-like) 1 67 IPR011009 -
Trme1249242g00001 67 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Trme1249242g00001 67 ProSiteProfiles Protein kinase domain profile. 1 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1249242g00001 67 Pfam Protein tyrosine and serine/threonine kinase 1 66 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1249242g00001 Trme-Chr1249242 2 204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1249242g00001 1 67 Receptor kinase-like Gene Family AT1G55610 58.209 3.54e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme1249242g00001 PK_Tyr_Ser-Thr 5.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1249242g00001 - - lja:Lj0g3v0241799.1 125.176