Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12488g00001 ATGGAGACATTAAACTCAACGGAGCCTCATTATGTTAGATGTGTGAAACCAAATAACCTCCTCAAGCCTGCAATTTTTGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGGATTAGTTGTGCTGGGTACCCAACTCGCCGTGCTTTCTTTGAGTTTATAAACCGATTTTCCCTCCTTGCCCCAGAGGCCACAGAAGCAAACAATGATGAGAAGGCTGTTTGCCAAAAGATTCTAGAAAAGATGGAGCTTAAAGGATATCAGATTGGAAAAACAAAGATATTTCTAAGAGCAGGTCAGATGGCTGAACTAGATGCTCGGAGAGCTCAAGTACTAAGAAGACTTGCATGCAAACTTTATCAGAACATGAGAAGGGAGGCTGCTGCTGTGAAAATTCAGAAGCACGTACGCAGACATGAATCAAGGAAAGGCTACATTAAACTCCATGCTTCAGTGCTTACTTTGCAAACAGCTTTGAGGGCAATCGCTGCTCGTAAAGAGTTTAGGTTTAAGAAACAGACTAAAGCTGCAACCATTATTCAGGCTCGCTGGCGGTGCCACAAGGCTTCCTCATATTATAAGAGGCTGAAGAGAGGTGCAATTGTGACGCAATGCCGATGGAGGGGGCGTGTAGCCAGAAAAGAGCTTAGGAACCTGAAAATG 684 0.4371 METLNSTEPHYVRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEATEANNDEKAVCQKILEKMELKGYQIGKTKIFLRAGQMAELDARRAQVLRRLACKLYQNMRREAAAVKIQKHVRRHESRKGYIKLHASVLTLQTALRAIAARKEFRFKKQTKAATIIQARWRCHKASSYYKRLKRGAIVTQCRWRGRVARKELRNLKM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12488g00001 228 ProSiteProfiles IQ motif profile. 132 161 IPR000048 GO:0005515
Trme12488g00001 228 ProSiteProfiles IQ motif profile. 155 184 IPR000048 GO:0005515
Trme12488g00001 228 PANTHER MYOSIN 1 188 - -
Trme12488g00001 228 ProSiteProfiles IQ motif profile. 180 206 IPR000048 GO:0005515
Trme12488g00001 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 175 IPR027417 -
Trme12488g00001 228 FunFam unconventional myosin-Va 134 182 - -
Trme12488g00001 228 ProSiteProfiles IQ motif profile. 203 228 IPR000048 GO:0005515
Trme12488g00001 228 Gene3D - 181 228 - -
Trme12488g00001 228 Gene3D - 130 180 - -
Trme12488g00001 228 Pfam Myosin head (motor domain) 1 104 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme12488g00001 228 FunFam unconventional myosin-Va 183 228 - -
Trme12488g00001 228 Gene3D Kinesin motor domain 1 50 IPR036961 -
Trme12488g00001 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 228 IPR027417 -
Trme12488g00001 228 Pfam IQ calmodulin-binding motif 205 224 IPR000048 GO:0005515
Trme12488g00001 228 Pfam IQ calmodulin-binding motif 181 201 IPR000048 GO:0005515
Trme12488g00001 228 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515
Trme12488g00001 228 ProSiteProfiles Myosin motor domain profile. 1 116 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme12488g00001 228 SMART iq_5 179 201 IPR000048 GO:0005515
Trme12488g00001 228 SMART iq_5 154 176 IPR000048 GO:0005515
Trme12488g00001 228 SMART iq_5 131 153 IPR000048 GO:0005515
Trme12488g00001 228 SMART iq_5 202 224 IPR000048 GO:0005515
Trme12488g00001 228 Gene3D - 51 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12488g00001 Trme-Chr12488 33 1546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12488g00001 1 228 Myosins gene family AT1G08730 67.300 6.84e-118 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12488g00001 K10357 - qsa:O6P43_007653 338.961