Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12487g00001 ATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTATTGATTGTTCATCATAGAAATTTGGTCTCTCTGATTGGATTTTGTGATGAAGGTGATATCAAAGCATTGATTTATGAATACATGCCCAATGGAAATCTCCAACAACACTTATTAGTGAAAAATACAAATATCTTAAAATGGAATGAGAGACTTAACATTGCAGTTGATGCAGCACACGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTGTGCATAGAGATTTGAAACCTTCCAACATATTACTAGACGAAAATATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTCGGTGATGATATTGATTCTCATATATCCACGCGCCCTGCCGGAACACTTGGTTACGCTGATCCTGA 410 0.3683 MQGYKEFQSEAQLLLIVHHRNLVSLIGFCDEGDIKALIYEYMPNGNLQQHLLVKNTNILKWNERLNIAVDAAHGLDYLHNGCKPPIVHRDLKPSNILLDENMHAKIADFGLSRAFGDDIDSHISTRPAGTLGYADP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12487g00001 136 Pfam Protein tyrosine and serine/threonine kinase 5 118 IPR001245 GO:0004672|GO:0006468
Trme12487g00001 136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trme12487g00001 136 ProSiteProfiles Protein kinase domain profile. 1 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12487g00001 136 SUPERFAMILY Protein kinase-like (PK-like) 2 136 IPR011009 -
Trme12487g00001 136 Gene3D Transferase(Phosphotransferase) domain 1 43 136 - -
Trme12487g00001 136 PANTHER OS07G0107800 PROTEIN-RELATED 2 136 - -
Trme12487g00001 136 Gene3D Phosphorylase Kinase; domain 1 1 42 - -
Trme12487g00001 136 SMART serkin_6 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12487g00001 136 FunFam Os07g0541700 protein 42 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12487g00001 Trme-Chr12487 632 1581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12487g00001 2 136 Receptor kinase-like Gene Family AT2G19230 65.185 6.00e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme12487g00001 PK_Tyr_Ser-Thr 5.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12487g00001 - - tpra:123886800 251.906