Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12464g00001 AAGTCCCTTTCCTTTCAATTCTTAGCAATAACATGTGTTTTCTTGCTTCACTTTCAATCCATAATTCATGCACAAGACCATATAGCAACTTCAGAATACGAAGCACTAGGCCTAACAACAGAACCAAAAAGAGAAACACTAGAAATCATCATTGGCGGAGGCGGTGGTTATTCCCCCGCTCCTTCCCCTGAACCTAACTGTCCTCCTCCTCAACCTCCACCAAGTCCTCCTCCTTCACCTAAGCCGCGCCCTCCAGCCCCTCGGCCACGCCCCCTCACTTTCCGACTAGATAGGGCCCGCCGCGTACTTATCCAATTCGCTACAACCGTCAAGCCAAATAGCATCACCACAAACTGGATTAATAGCACAAAAGATACATGTAACTTTAATGGAATCCTTTGTGGCTATTACCCAACGGATGGCCAACGTGCAGTTGCTGGATTGGACTTAAACCAAGGAAGACTCTCTGGTAAAACCTGTGACAATATACCATTAACCGGTCTCTTAGACAAATTACAAGAGTTAACATTCTTCCATGTAAACTCCAACAGTTTCTCAGATAAAATCCCAACACAAATCCTTAATTTCCCTTATTTCTACGAACTTGACCTTAGTAACAACAAATTTGTCGGCGAGTTTCCGGAAGTAGTTATTAAAGCTACAAATCTAGTTTTTCTAGACCTCAGGTTCAACAATCTAGAAGGTCCTGTTCCATCAGACCTATTTAAAAAGGATCTTGACGTAATTTTCATCAACAACAACAAATTCACCGGAAGTTTACCTGCGAATTTCGGGTCTACCCCTGCAAGGTACTTAACATTTGCACGCAATCAATTAACAGGTGAAATTCCTAGAAGTATCGGCGATGCTTCGAAAACTTTAACTGAAGTGCTTTTTTTGGGTAATAAATTTGAAGGGTGTTTACCATTTGAAATTGGGTATCTGAAAAAAGCAACAGTTTTTGATGTTAGTTTGAATTCATTAACTGGGCCTATTCCAGCTTCATTTGGTTGTTTGGAAAAGATTCAGTTTTTGAATTTGGCACATAACAAATTCTATGGTACTGTTCCTGAGAGTGTTTGTGTTCTACCTGGGATAAAAAACAATGGAAATTTATCTTTGTCGGATAATTATTTCACTGCAATTGATCCAGCATGTTGGTATTTGTTGAAATCTAAGATATTGGATGTTAGTAACAATTGTATTCCTGGGCTTCCTAATCAAAGATCAAAGAAAGATTGTTATGATTTTCAATGTAAAGTGAAGCCATGTTCGAATCATCAGAGTCTGAGTTATGTTCCTTGTAAGACACGTTGGGGGGCTAAACAGGACACTGCTCCTGTTTCTCAAGAAATGGCTACTGAGCCTGTTACTTACAAGTCTCTTAAACCTCATCATCGGTTGAGAATGTGA 1413 0.3999 KSLSFQFLAITCVFLLHFQSIIHAQDHIATSEYEALGLTTEPKRETLEIIIGGGGGYSPAPSPEPNCPPPQPPPSPPPSPKPRPPAPRPRPLTFRLDRARRVLIQFATTVKPNSITTNWINSTKDTCNFNGILCGYYPTDGQRAVAGLDLNQGRLSGKTCDNIPLTGLLDKLQELTFFHVNSNSFSDKIPTQILNFPYFYELDLSNNKFVGEFPEVVIKATNLVFLDLRFNNLEGPVPSDLFKKDLDVIFINNNKFTGSLPANFGSTPARYLTFARNQLTGEIPRSIGDASKTLTEVLFLGNKFEGCLPFEIGYLKKATVFDVSLNSLTGPIPASFGCLEKIQFLNLAHNKFYGTVPESVCVLPGIKNNGNLSLSDNYFTAIDPACWYLLKSKILDVSNNCIPGLPNQRSKKDCYDFQCKVKPCSNHQSLSYVPCKTRWGAKQDTAPVSQEMATEPVTYKSLKPHHRLRM 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12464g00001 470 Gene3D Ribonuclease Inhibitor 270 431 IPR032675 -
Trme12464g00001 470 MobiDBLite consensus disorder prediction 61 91 - -
Trme12464g00001 470 Pfam Leucine rich repeat N-terminal domain 98 134 IPR013210 -
Trme12464g00001 470 Gene3D Ribonuclease Inhibitor 97 269 IPR032675 -
Trme12464g00001 470 MobiDBLite consensus disorder prediction 50 92 - -
Trme12464g00001 470 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 106 444 - -
Trme12464g00001 470 SUPERFAMILY L domain-like 106 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12464g00001 Trme-Chr12464 193 1605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12464g00001 92 417 Leucine-rich Repeat extension Gene Families AT3G24480 42.169 1.14e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12464g00001 - - psat:127108214 630.172