Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme124637g00001 ATGGCTAGACAAAAGGTAAAACTTGCTTTCATTGTTAATGATGTTGCAAGAAAAGCAACATATAAGAAAAGGAGCAAGAATGTATTGAAAAAAGTTAATGAACTAAGCACCCTATGCGGAATTGAAGCATGTGCTATAGTCTATGGTCCGTATGAGCCAGAACCTGAGATTTGGCCATCGTCCCCTAGGGGAGTCCAAAAGGTGGTATCGAAATTCAGGACAAAACCTGAATTTGAGCAAAGTAAGAAAAAATTGAGTCAAGATGATTACTTGAAGCAGAGAATTGTGAAGGGTGACGACCAACTAAAGAAGTTGAGGAAAGAAAATAGAGAGAATGAGATGAAAATGCTTATGTATGAATATCTTAAAGGTCAAATTGTGCTCGACAATATTTCAATGAATGATTTGAATGATCTTTCTTGGTATATTGACCACAATTTGAAGGACATTGGTAGAATATTGGAAGCAGGGTATACTGATAATGGTCAAGGTCAAATTATGACTGCT 507 0.3629 MARQKVKLAFIVNDVARKATYKKRSKNVLKKVNELSTLCGIEACAIVYGPYEPEPEIWPSSPRGVQKVVSKFRTKPEFEQSKKKLSQDDYLKQRIVKGDDQLKKLRKENRENEMKMLMYEYLKGQIVLDNISMNDLNDLSWYIDHNLKDIGRILEAGYTDNGQGQIMTA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme124637g00001 169 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trme124637g00001 169 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Trme124637g00001 169 PANTHER MADS BOX PROTEIN 3 125 - -
Trme124637g00001 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Trme124637g00001 169 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Trme124637g00001 169 FunFam agamous-like MADS-box protein AGL80 13 98 - -
Trme124637g00001 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme124637g00001 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme124637g00001 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme124637g00001 169 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme124637g00001 Trme-Chr124637 1 507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme124637g00001 1 155 Type I MADS-box Gene Family AT5G48670 53.548 3.05e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme124637g00001 SRF-TF 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme124637g00001 - - gmx:100813231 214.542