Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12456g00001 ATGGCAGCTGCTTTTGATTTCTTGTGTGATGTTGTTCCTGGAAAGACTTCCTGGCGATTCAAAGTGAATTCTGTGGAAATGGTTCTTGTTGATTCCAAGGGTGGCAAGATCCAGGCTACTATCCGGAAACAACTTTTGTATTTGTTTCGTAATAAGTTGGAGGAGGGTGTTGTTTATGTGTTGTCGTTCTTTACTACTGCTCCCAGTACCGGTGCTTATCGTAGCACCCTCCATCCATTTAGGCTTGTTTTTCAGATGAGGACCAAGGTGGAGTTGTCTGAGGGACCCGAAATATCACGCTACGGTTTTTCATTCACTCCCATTAGTGAAGTTTGTGCTTTTCCTTCTGATTATGATTTTTTAGTTGATGTTATTGGTGTACTAACTGGCATGTCTGCTGAAAGAGAGTATCTGTGGGAAAGAACGGTCACCAAGATGATTGTTATCAAGCTGACTGATCAGAGCGGCAAGTGCGAGTGTGCTTTGTTTGGAGATTATGTTGAAGATTTTAAGAAAATGCTTGCC 525 0.4229 MAAAFDFLCDVVPGKTSWRFKVNSVEMVLVDSKGGKIQATIRKQLLYLFRNKLEEGVVYVLSFFTTAPSTGAYRSTLHPFRLVFQMRTKVELSEGPEISRYGFSFTPISEVCAFPSDYDFLVDVIGVLTGMSAEREYLWERTVTKMIVIKLTDQSGKCECALFGDYVEDFKKMLA 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12456g00001 175 CDD RPA1_DBD_A_like 24 90 - -
Trme12456g00001 175 Pfam Domain of unknown function DUF223 26 111 IPR003871 -
Trme12456g00001 175 Gene3D - 97 175 IPR012340 -
Trme12456g00001 175 Gene3D - 9 94 IPR012340 -
Trme12456g00001 175 SUPERFAMILY Nucleic acid-binding proteins 23 95 IPR012340 -
Trme12456g00001 175 SUPERFAMILY Nucleic acid-binding proteins 103 170 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12456g00001 Trme-Chr12456 1 1047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12456g00001 29 166 Core DNA Replication Machinery Family AT2G06510 28.873 1.16e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12456g00001 - - tpra:123889473 237.269