Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme124491g00001 CCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTGGGAGATTTCGGTTTAGCAAAGCTTATGGATTACAAAGATACCCATGTTACTACTGCTGTTCGTGGTACGATTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTTGCACGTCTTGCCAATGATGATGATGTTATGTTGCTTGATTGGGTAGGTTTTTAA 309 0.3981 PKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVGF 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme124491g00001 102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Trme124491g00001 102 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 88 - -
Trme124491g00001 102 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme124491g00001 102 SUPERFAMILY Protein kinase-like (PK-like) 2 95 IPR011009 -
Trme124491g00001 102 Pfam Protein kinase domain 2 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme124491g00001 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme124491g00001 Trme-Chr124491 1 309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme124491g00001 1 100 Receptor kinase-like Gene Family AT1G71830 99.000 1.56e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme124491g00001 Pkinase 2.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme124491g00001 K13416 - mof:131164254 201.445