Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme124428g00001 ATGGCTATGGCTGTGGCTCATCATAGAGAAAGTAGTAGCAGTGGTGGAAGCATTGATAAGCATCTTGATTCAGGAAAATATGTTAGGTACACTTCTGAACAAGTTGAAGCTTTGGAAAGGGTTTATGCTGAGTGTCCTAAACCTAGTTCTATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCAAAACAAATCAAG 216 0.3889 MAMAVAHHRESSSSGGSIDKHLDSGKYVRYTSEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIK 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme124428g00001 72 Gene3D - 19 72 - -
Trme124428g00001 72 MobiDBLite consensus disorder prediction 1 23 - -
Trme124428g00001 72 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 22 72 IPR044830 GO:0003700
Trme124428g00001 72 Pfam Homeodomain 26 72 IPR001356 GO:0003677
Trme124428g00001 72 SUPERFAMILY Homeodomain-like 25 63 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme124428g00001 Trme-Chr124428 16 231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme124428g00001 1 72 Homeobox Transcription Factor Family AT5G60690 80.822 2.44e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme124428g00001 Homeodomain 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme124428g00001 K09338 - gmx:100813804 134.42