Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1243375g00001 ATGTCACCGGAATTAGTGAACGGCGGCGAGCATGGGTCGCCGGCGGATATTTGGGCACTTGGGTGTGCGGTGGTGGAAATGGTAACGGGAAAACCAGC 98 0.5816 MSPELVNGGEHGSPADIWALGCAVVEMVTGKPA 33
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1243375g00001 33 ProSiteProfiles Protein kinase domain profile. 1 33 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1243375g00001 33 Pfam Protein kinase domain 1 32 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1243375g00001 33 Gene3D Transferase(Phosphotransferase) domain 1 1 33 - -
Trme1243375g00001 33 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 32 - -
Trme1243375g00001 33 SUPERFAMILY Protein kinase-like (PK-like) 1 32 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1243375g00001 Trme-Chr1243375 1 98 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1243375g00001 1 33 MAP Kinase Kinase Kinase AT3G50310 69.697 4.96e-11 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme1243375g00001 Pkinase 4.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1243375g00001 - - gmx:100798607 61.2326