Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12427g00001 ATGAAAGTTTTGACCGATGAGGTTGTTTCTTTTGCTAAAAATTCTGAAATTGAGGCAGAGGCTTTTTCTGAGTTTGGCATGTTGCTTGAGAAATTGCCACCAATCTTGAATGAATTGAATGATAATAGCACTATCTTGGACAAGCCATCAATTCGAAAATCATTGGAATCCCTTGAGAATGAGTTACAGCGTGCTAAAACTTTAACGAAAAGCTCAAATTTGAGACACCCTATTAAGCAAATTGAGGACATGACACATGATATCGGTCGGTCGTTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTTTCCATTGATTTTAGAGAGAAGATTGGTACATTGCAAAGACAGATGATGAATGCAAGATTTGATGGCAGTTCAAGTATCACTTCGAGTCCAAAATCGGAGCTTTTCGCGAATGAAACGAAGACAGTTTGGGAAATAGAAGAGGAAATCGTTAATGTTTCGATTGATGATGTTATTTTGCAACTTAAGAATGGTAGTGATGAAGAATTTGCAGTTTCACTTCTGAGACTAAAGGAGTTCATGAGAAGTGAAAAATTGGACGGCGTTTTGATTAATGAGGAAGCAATTATCGCCATTCTTTTCAAGCGTCTAGTTTCGTGTAAGGCAGACAATAGGTTATCCATAATTCAATTGCTAAGAAGTATTGCTTTTCAGAATGACGAGAAAAAGGAGAAGATGGTTGAGATTGAGTTTTTATCGGCAGTGGTGAAGTCTCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGACCTCTCTAACGTTTCAGCAGTTCGAAGGCGGATCGGAAGAATTCAAGGGTGTATCGTTATGTTGGTCGCTATCCTTAATGGAGATGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATTTTGTCTAGTAATAACCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTGGTTCAGTATTTGAAGGAAGGTTCTGACATGAACAAGATCCTAATGGCAACCGCACTTTCTAGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCGATCGAGCCCCTTGTCAAAATGTTTATCACTGGGAAACTTGAATCCAAGTTATCATCTTTAAACGCACTACAAAATCTGTCTAC 1169 0.3995 MKVLTDEVVSFAKNSEIEAEAFSEFGMLLEKLPPILNELNDNSTILDKPSIRKSLESLENELQRAKTLTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNARFDGSSSITSSPKSELFANETKTVWEIEEEIVNVSIDDVILQLKNGSDEEFAVSLLRLKEFMRSEKLDGVLINEEAIIAILFKRLVSCKADNRLSIIQLLRSIAFQNDEKKEKMVEIEFLSAVVKSLTRDSEERREAVGLLLDLSNVSAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAIEPLVKMFITGKLESKLSSLNALQNLST 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12427g00001 390 SUPERFAMILY ARM repeat 163 389 IPR016024 -
Trme12427g00001 390 Coils Coil 48 75 - -
Trme12427g00001 390 Gene3D - 178 390 IPR011989 -
Trme12427g00001 390 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12427g00001 Trme-Chr12427 1 1366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12427g00001 112 389 U-box Gene Family AT1G68940 28.814 9.69e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12427g00001 K08332 - gmx:100791453 610.912