Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme124237g00001 TTCAAGCTCTGCAAGGTTCGTTCTGTGCAATTTGGGCAGAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACTATCCGCTACCCAGACCCAGTCATCAGAGCTAATGACACCATCAAGCTTGATCTGGAGGAGAACAAGATTGTTGATTTCATCAAATTTGATGTCGGAAATGTAGTTATGGTTACTGGTGGTAGAAACAGAGGACGTGTTGGAGTGATCAAGAACAGAGAAAAGCATAAGGGAACATTCGAGACAATCCACGTTCAGGATGCCACTGGGCACGAATTTGCAACTCGTTTGGCCAATGTGTTCACTATTGGCAAGGGAACAAAGCCATGGGTATCTCTTCCCAAGGGTAAGGGTATTAAGCTTACTGTCAT 386 0.4508 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLANVFTIGKGTKPWVSLPKGKGIKLTV 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme124237g00001 128 Pfam Ribosomal family S4e 1 49 IPR013845 -
Trme124237g00001 128 CDD KOW_RPS4 55 109 IPR041982 -
Trme124237g00001 128 SMART kow_9 54 81 IPR005824 -
Trme124237g00001 128 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 128 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme124237g00001 128 Pfam KOW motif 57 90 IPR005824 -
Trme124237g00001 128 Gene3D - 55 125 IPR014722 -
Trme124237g00001 128 Gene3D - 2 52 IPR038237 -
Trme124237g00001 128 FunFam 40S ribosomal protein S4 2 52 - -
Trme124237g00001 128 Pfam 40S ribosomal protein S4 C-terminus 92 128 IPR032277 -
Trme124237g00001 128 FunFam 40S ribosomal protein S4 55 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme124237g00001 Trme-Chr124237 229 614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme124237g00001 1 128 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.406 1.03e-86 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme124237g00001 K02987 - gmx:100795220 233.802