LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme12419g00001	ATGTCCGCTTCCTCTCCATCTCGTTGTAACACCAATGGAAGTAAAGTAGAGTTGCCGGAAAAAGATTCTTCACCTAAAAAATTAGGAAATAAAGCATCTATGTCGAAGAATGTGCGGAAAGGTATGGTACAAACAATATCTTCCTCTTCAGTGAATGGCAATAGAGTGTGCAAACTTTCGCGCAATAGCCCYCGAACAGTAAARTCGGTCATCAAAAGCAAGAGTTTGGGTAAGAAGAAACYAAAGCAGGGTTCTGATTCTGCTTTACATGTTMCTCCATCCATTGAGGGAAATAACAACCCAGTTCCCGCTGCAACTCCACTTGTTTGTGAGAGATGTTGGTGTGAAATAGAAAATACAAATATAGAAAGCAGCAAAGGTATTATATCATCGGGCTCTCCAAGCCCTGCAGATGGAAAAAACTTGAAAAGTGTACTCTCTGGGCCAGCATCAACTGGTTGTAATAGAGGCATAGAAGTTACAAAAGTGAAAAAGAATACCAGATTGAAAGAGCAGCTTGAATTTTCGCAGAGTTCAAAGAGTAGCCAAGGTGATTACAGTAGTAGTACAAGTACCAGCGACGAGAGTAATATCAGTGGTTCTAGTTGTGGCAATAGGCCTCACATGTCAAAGGACTTTAGATGGCAAGCCATACGAGATGCTCAAATGCAGCATGGCGTCTTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGTACTGTATATCTTTCTGAACTAATTGGCCAAAATTGTTTGTTTGCTATTAAAGTAATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGGGAAATCTTACGAATGCTGGATCATCCTTTTCTTCCAACACTGTATGCACAGTTTACATCAGAAAATCTGTCATGTCTGGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGCAGATGTTTTTCAGAGCCAGCAGCAAGGTACAAAACTAAGAATACTGTTCAGTAA	1035	0.4058	MSASSPSRCNTNGSKVELPEKDSSPKKLGNKASMSKNVRKGMVQTISSSSVNGNRVCKLSRNSPRTVKSVIKSKSLGKKKXKQGSDSALHVXPSIEGNNNPVPAATPLVCERCWCEIENTNIESSKGIISSGSPSPADGKNLKSVLSGPASTGCNRGIEVTKVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNISGSSCGNRPHMSKDFRWQAIRDAQMQHGVLGLRHFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARYKTKNTVQ	344

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme12419g00001	344	Gene3D	Phosphorylase Kinase; domain 1	227	343	-	-
	Trme12419g00001	344	FunFam	Serine/threonine-protein kinase D6PK-like	231	316	-	-
	Trme12419g00001	344	ProSiteProfiles	Protein kinase domain profile.	233	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme12419g00001	344	Pfam	Protein kinase domain	234	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme12419g00001	344	SUPERFAMILY	Protein kinase-like (PK-like)	208	340	IPR011009	-
	Trme12419g00001	344	PANTHER	FLIPPASE KINASE 1-RELATED	49	337	-	-
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	37	57	-	-
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	1	18	-	-
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	1	57	-	-
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	72	95	-	-
	Trme12419g00001	344	SMART	serkin_6	233	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	125	148	-	-
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	171	207	-	-
	Trme12419g00001	344	MobiDBLite	consensus disorder prediction	172	206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme12419g00001	Trme-Chr12419	37	1071	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme12419g00001	104	337	AGC Kinase Gene Family	AT3G52890	59.176	2.39e-98	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trme12419g00001		Pkinase	8.3e-14	CL0016