Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123990g00001 ATGGGTCGTAGAAAAATAGAGATGGAATATTTGAAAGATAAGGATGCAAGGTATGTGGCATTTTCAAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAGTCAATTATCAACTCTTTGTAATGCTAGAGTTGGTGTGTTTGGATTCACTCCTGGTGGTAAACCATTTGCTTTTGGTTCTCCAACTTTTCAAGCTGTGACTAATGAGTACCTTAATGAAGGACAAGGTGAATCATCAAACCAAAATGTTGAGAATTCTGAAAATGAAAATCTCATCAATCTCAATGAACAACTTATGGATGTGACCAAAGAGCTGAAGGAGGTGGAAATTACAAAGGACAAAAATGGTAAAGTCCCTAATATTTCCTATGATGATCTTGATTTAGAGCAGCTTCAAAAAGTTAAGGCTAGATTGAAAGAGCTCCATGGTGACATTGAGGCAGCATCATCTATGCTTATCCTTGCAAAGGAACCTAGATGA 477 0.3669 MGRRKIEMEYLKDKDARYVAFSKRKNGLFKKASQLSTLCNARVGVFGFTPGGKPFAFGSPTFQAVTNEYLNEGQGESSNQNVENSENENLINLNEQLMDVTKELKEVEITKDKNGKVPNISYDDLDLEQLQKVKARLKELHGDIEAASSMLILAKEPR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123990g00001 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Trme123990g00001 158 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Trme123990g00001 158 CDD MADS 2 60 - -
Trme123990g00001 158 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme123990g00001 158 PANTHER MADS BOX PROTEIN 3 143 - -
Trme123990g00001 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme123990g00001 158 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Trme123990g00001 158 Coils Coil 127 150 - -
Trme123990g00001 158 Coils Coil 83 110 - -
Trme123990g00001 158 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme123990g00001 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme123990g00001 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123990g00001 Trme-Chr123990 15 491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123990g00001 1 155 Type I MADS-box Gene Family AT2G34440 37.356 5.83e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme123990g00001 SRF-TF 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123990g00001 - - mtr:25493407 170.629