Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12397g00001 ATGTCTTTTGTTAATCATTATCAAGGATCTTTTTCAAGGACAGCAGTTAATTTCAGTGCAGGATGTCAAACAGCAGTATCAAATATTGTGATGGCATTAACTGTGATTTTGTTCCTTCAATTATTTGCAAGGCTCTTRTACTACACRCCTATGGCTATCCTTGCTGCTATCATCCTCTCTGCACTTCCTGGATTAATCGATATAAACGAGGCTCGCTATATCTGGAAGGTCGACAAATTAGACTTCCTTGCCTGTATTGGCGCTTTTGTTGGCGTCTTGTTTGCATCCGTAGAGATTGGTCTTCTTGTTGCAGTGACAATCTCATTTGCAAAGATACTAATACAATCAATTCGACCTGGAGTGGAAATTCTCGGAAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTTACTCAATATCCGATGGCCACAAGCACACCAGGCATCATAGTGATCCGCATAAGTTCCGGCTCACTCTGCTTCGCAAATGCCAATTTTTGGGCCGTGGAAGAAGATGACATTCAAGAAACTTCCAAGGGAAATGTCCGAGCCATAATTATGGACATGACTAACTTGATGAATGTTGATACTTCTGGAATTCTAGCACTAGAGGAATTACATAAGAGGCTTCTTTCACGCGGCGTAGAATTAGCTATGGTCAACCCAAGATGGCTCGTAATTCATAAGCTCAAGCTTGCACACTTTGTGGACAAAATTGGGAAACAATGGGTTTTTCTGACTGTTGGAGAGGCCGTAGACGCGTGTCTCTCTTCTAAAATCGCTACCGCTTGA 789 0.4208 MSFVNHYQGSFSRTAVNFSAGCQTAVSNIVMALTVILFLQLFARLLYYTPMAILAAIILSALPGLIDINEARYIWKVDKLDFLACIGAFVGVLFASVEIGLLVAVTISFAKILIQSIRPGVEILGRVPRTEAFCDVTQYPMATSTPGIIVIRISSGSLCFANANFWAVEEDDIQETSKGNVRAIIMDMTNLMNVDTSGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVDKIGKQWVFLTVGEAVDACLSSKIATA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12397g00001 262 SUPERFAMILY SpoIIaa-like 144 254 IPR036513 -
Trme12397g00001 262 Pfam STAS domain 139 250 IPR002645 -
Trme12397g00001 262 Gene3D STAS domain 118 258 IPR036513 -
Trme12397g00001 262 PANTHER SULFATE TRANSPORTER 2 255 IPR001902 GO:0016020|GO:0055085
Trme12397g00001 262 ProSiteProfiles STAS domain profile. 138 254 IPR002645 -
Trme12397g00001 262 FunFam Sulfate transporter 31 118 257 - -
Trme12397g00001 262 CDD STAS_SulP_like_sulfate_transporter 139 247 - -
Trme12397g00001 262 Pfam Sulfate permease family 8 86 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12397g00001 Trme-Chr12397 4 1589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12397g00001 2 259 Inorganic Solute Cotransporters AT5G10180 59.926 1.61e-106 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12397g00001 K17469 - gmx:100776591 429.869