Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12396g00001 GCACTTTTGGCCTTGCTACTGGTACTGTTGCTTCTGTACACTCGTAAGAGGGGTAATTCAAGTCCAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGGAGGCAGTCCTCCGCCTCCTGGTGTATCGGTAAACCTTGCAAATGCAGGAGACTCGTTTACGTATCATCAGTTGCTTCAGGCAACAGGAGATTTCAATGATGCAAATCTTATAAAGCATGGCCACACTGGGGATTTATTCAATGGTGTTTTAGAAAATGGGATTCCTGTCGTCATCAAAAGGATCGACATGCGGTCAACGAAAAAGGATGCTTACCTATTGGAATTGGATTTTTTTAATAAGGTTTCTCATCAAAGATTTGTTCCCTTATTAGGTCATTGCTTAGAAAACGAGAACGAGAAGTTCCTGGTTTATAAACATATGCCGAAAGGGGACTTGTCTAATTGCTTATTCTTCAAAAACACCACATCAGAAGATGGTACTTTGCAGTCATTGGACTGGATAACTAGGTTAAAGATTGCTACTGGAGCAGCAGAGGCCATATCGTATCTTCATCATGAATGTATTCCACCTATTGTTCACAGAGATATCCAAGCGAGCAGTATACTTCTCGATGACAAATATGAAGTTCGGTTAGGGAGTTTAAGTGAAGCTTGTGCTCAAGAAGGTGATACCCATCAAAGTAAAATCACCCGGTTTCTGCGACTGCCTCA 710 0.4268 ALLALLLVLLLLYTRKRGNSSPRGNGVGPAPAGGSPPPPGVSVNLANAGDSFTYHQLLQATGDFNDANLIKHGHTGDLFNGVLENGIPVVIKRIDMRSTKKDAYLLELDFFNKVSHQRFVPLLGHCLENENEKFLVYKHMPKGDLSNCLFFKNTTSEDGTLQSLDWITRLKIATGAAEAISYLHHECIPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDTHQSKITRFLRLP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12396g00001 236 SMART tyrkin_6 64 233 IPR020635 GO:0004713|GO:0006468
Trme12396g00001 236 FunFam - 140 236 - -
Trme12396g00001 236 FunFam Predicted protein 34 139 - -
Trme12396g00001 236 SUPERFAMILY Protein kinase-like (PK-like) 43 213 IPR011009 -
Trme12396g00001 236 ProSiteProfiles Protein kinase domain profile. 64 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12396g00001 236 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 227 - -
Trme12396g00001 236 Pfam Protein tyrosine and serine/threonine kinase 70 213 IPR001245 GO:0004672|GO:0006468
Trme12396g00001 236 Gene3D Phosphorylase Kinase; domain 1 41 139 - -
Trme12396g00001 236 MobiDBLite consensus disorder prediction 19 40 - -
Trme12396g00001 236 Gene3D Transferase(Phosphotransferase) domain 1 140 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12396g00001 Trme-Chr12396 440 1608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12396g00001 2 236 Miscellaneous Gene Families AT2G16250 61.765 4.02e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Trme12396g00001 PK_Tyr_Ser-Thr 6.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12396g00001 - - gmx:100776587 390.578