Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123816g00001 ATGCCTTCGCTACTCTCTCCTGGCAAAATCCACAAACTCCAGATCGAGAATTTCAAATCCTACAAGGGTTTCCAAGATATCGGTCCTTTCTATGATTTCACCGCCATTATTGGACCTAACGGTTCCGGCAAGTCCAACCTTATGGACGCTATTAGCTTCGTTCTTGGCGTCAGAACCGGCCAACTCCGTGGTGCTCAACTCAAAGATCTCATCTACGCATTCGATGATAGAGATAAAGAACAGAAAGGAAGAAGAGCTTTCGTTCGTTTGATTTATCGACTTGCGAACGATTCTGAGCTCAAATTCACTAGAACTATTACTTCCGCTGGAGCAAGTGAATATCGTATTGATGATAGTGTTGTTACTTGGGATGTTTATAATGCTAAACTCAAATCGTTAGGGATTCTTGTTAAGGCTCGCAATTTCTTAGTCTTTCAG 438 0.4224 MPSLLSPGKIHKLQIENFKSYKGFQDIGPFYDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRAFVRLIYRLANDSELKFTRTITSAGASEYRIDDSVVTWDVYNAKLKSLGILVKARNFLVFQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123816g00001 146 Pfam RecF/RecN/SMC N terminal domain 10 136 IPR003395 -
Trme123816g00001 146 CDD ABC_SMC1_euk 10 146 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Trme123816g00001 146 Gene3D - 8 146 IPR027417 -
Trme123816g00001 146 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 146 - -
Trme123816g00001 146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 146 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123816g00001 Trme-Chr123816 104 541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123816g00001 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 9.27e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123816g00001 K06636 - lja:Lj5g3v1073870.1 266.544