Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123683g00001 GAAGGTTCGCCTATGTTGGAGGGTACTACAAGCGGAGAGCCTTCTATTAAAGGACTAAACTCGAAGAAAAGGAAAAGAAGTGGACAAGATGCTGATAATGATAAAGCCGATGGAGCTCGAGAATTACAAAGTGAAGGTGCAAAGGACAATCCCGAGAATCAACAGAAAGGAGACCAACAACCAACTTCAGTAACCAAGGCTTCTGGAAAGAATGTCAAACAGGGCTCTCAAACTTCTGATCCACCTAAGGAAGAATACATACATGTTAGGGCTCGACGGGGCCAAGCAACAAACAGTCATAGCCTTGCAGAGAGGGTAAGGAGGGAAAAGATAAGTGAAAGAATGAAGTTTCTTCAAGAACTTGTGCCTGGATGCAGCAAGGTGGCTTCCAAATTTTAA 399 0.4386 EGSPMLEGTTSGEPSIKGLNSKKRKRSGQDADNDKADGARELQSEGAKDNPENQQKGDQQPTSVTKASGKNVKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVASKF 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123683g00001 132 MobiDBLite consensus disorder prediction 1 17 - -
Trme123683g00001 132 MobiDBLite consensus disorder prediction 18 47 - -
Trme123683g00001 132 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 22 130 IPR024097 GO:0006355
Trme123683g00001 132 MobiDBLite consensus disorder prediction 1 107 - -
Trme123683g00001 132 MobiDBLite consensus disorder prediction 48 81 - -
Trme123683g00001 132 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 132 IPR011598 GO:0046983
Trme123683g00001 132 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 131 IPR036638 GO:0046983
Trme123683g00001 132 Gene3D - 85 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123683g00001 Trme-Chr123683 1 577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123683g00001 20 131 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 62.832 3.95e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123683g00001 - - tpra:123911592 234.187