Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123572g00001 GTAGGCCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTGAGTTAA 171 0.4503 VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVS 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123572g00001 56 SUPERFAMILY Pseudouridine synthase 1 54 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trme123572g00001 56 Pfam TruB family pseudouridylate synthase (N terminal domain) 1 53 IPR002501 GO:0006396
Trme123572g00001 56 Gene3D Pseudouridine synthase 1 56 - -
Trme123572g00001 56 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 1 55 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123572g00001 2 45 NAC Transcription Factor Family AT3G57150 56.818 8.00e-10 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123572g00001 K03177 - cit:102611441 115.546