Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1234981g00001 TCACTATTGTTGAACCCTGCTCACGCGGTTGCGAGGCTGGGTGGGTACAGAGCTCCAGAGCAGGCGGAAGCAAAGAAGCTTTCACAAGAGGCAGATGTGTATGCTTTCGGGGTGTTGATATTGGAAGTTTTGACAGGAAGAGCTCCTTCCTCCTCTCAGTATTCTTCTCCCGTAGGAGTTCGCCCTTGTGTGGAATTCGAGGAACAAG 208 0.5144 SLLLNPAHAVARLGGYRAPEQAEAKKLSQEADVYAFGVLILEVLTGRAPSSSQYSSPVGVRPCVEFEEQ 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1234981g00001 69 ProSiteProfiles Protein kinase domain profile. 1 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1234981g00001 69 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 63 IPR046959 -
Trme1234981g00001 69 Gene3D Transferase(Phosphotransferase) domain 1 5 69 - -
Trme1234981g00001 69 SUPERFAMILY Protein kinase-like (PK-like) 15 52 IPR011009 -
Trme1234981g00001 69 Pfam Protein tyrosine and serine/threonine kinase 16 52 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1234981g00001 Trme-Chr1234981 3 210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1234981g00001 1 50 Receptor kinase-like Gene Family AT2G36570 82.000 8.22e-24 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme1234981g00001 PK_Tyr_Ser-Thr 1.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1234981g00001 - - csav:115709286 101.293