Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1234845g00001 ATGGTTACTGGTGGAAGGAACAGAGGGCGTGTCAGAGTGATCAAGAACAGGGAAAAACATAAGGGAACTTTCGAAACTATCCACGTTCAGGATGCTACTGGTCATGAATTTGCAACACGTTTGGCCAATGTGTTCACTATTGGTAAGGGAACAAAGCCATGG 162 0.4506 MVTGGRNRGRVRVIKNREKHKGTFETIHVQDATGHEFATRLANVFTIGKGTKPW 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1234845g00001 54 CDD KOW_RPS4 1 48 IPR041982 -
Trme1234845g00001 54 FunFam 40S ribosomal protein S4 1 54 - -
Trme1234845g00001 54 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 54 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme1234845g00001 54 Gene3D - 1 54 IPR014722 -
Trme1234845g00001 54 Pfam 40S ribosomal protein S4 C-terminus 31 54 IPR032277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1234845g00001 Trme-Chr1234845 19 180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1234845g00001 1 54 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 88.889 6.27e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1234845g00001 K02987 - zju:107404727 106.686