Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123464g00001 AAGCATGGAGAGGGGAACTGGAACGCTGTTCAGAAGCATTCAGGCCTGTCTCGATGTGGAAAAAGTTGCCGACTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGAGGAGGAGCAGTTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTGATGTCAGTGATGTTAACATCTTTCTTGTATCTTCTTTATGA 225 0.44 KHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTAEEEQLIAQLHSEMGNRWARDVSDVNIFLVSSL 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123464g00001 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 35 IPR017930 -
Trme123464g00001 74 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 61 - -
Trme123464g00001 74 ProSiteProfiles Myb-like domain profile. 1 31 IPR001005 -
Trme123464g00001 74 Gene3D - 36 66 - -
Trme123464g00001 74 FunFam - 1 36 - -
Trme123464g00001 74 SUPERFAMILY Homeodomain-like 1 60 IPR009057 -
Trme123464g00001 74 CDD SANT 1 31 IPR001005 -
Trme123464g00001 74 Gene3D - 1 35 - -
Trme123464g00001 74 Pfam Myb-like DNA-binding domain 2 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123464g00001 Trme-Chr123464 1 346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123464g00001 1 61 MYB Transcription Factor Family AT5G06100 83.607 1.63e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme123464g00001 Myb_DNA-bind_6 3.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123464g00001 K09422 - qsa:O6P43_029762 125.946