Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1233899g00001 ATGGCTCCGGTTCGAATTCCTCTGCCTCGTGATCTTCATGAGGAGCCAATATATGTGAATCCGAAGCAGTACCATGCTATTATGAGACGCAGACAGTATCGCGCAAAGCTAGAAGCACATAACAAACTCATCAAAAATCGGAAA 144 0.4444 MAPVRIPLPRDLHEEPIYVNPKQYHAIMRRRQYRAKLEAHNKLIKNRK 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1233899g00001 48 Gene3D - 13 48 - -
Trme1233899g00001 48 SMART cbf3 12 48 IPR001289 GO:0003700|GO:0006355
Trme1233899g00001 48 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 15 48 IPR001289 GO:0003700|GO:0006355
Trme1233899g00001 48 ProSiteProfiles NF-YA/HAP2 family profile. 13 48 IPR001289 GO:0003700|GO:0006355
Trme1233899g00001 48 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 48 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1233899g00001 Trme-Chr1233899 32 175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1233899g00001 5 48 CCAAT-HAP2 Transcription Factor Family AT1G54160 71.111 4.98e-16 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme1233899g00001 CBFB_NFYA 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1233899g00001 K08064 - gmx:100500765 82.8037