Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123360g00001 TTCCGATTTCTCGACGAGCTCAACTCGTCTTCCGAAGATTCCACCGTCGTTGATTCCGATTTCGTCGTTATCCTCGCCGCTCTTCTCTGCGCTCTCATCTGCGTTCTAGGTCTCGTCGCCGTCGCACGCTGCGGTTGTCTCCGTCGCTTACGTCTCCCTTCCCCCGCTCTCGCTTCTCAAACTACTACACCTCCCGCTGCAGCAAACAAAGGCGTTAAGAAGAAGATTCTTCGCTCTCTACCGAAGCTTACAGCGACAGAGGAATCCGCAGTGAAATTCTCCGATTGTGCTATCTGTTTGAGTGAATTCACCGCCGGTGATGAAATTCGAGTGTTACCTCAGTGCGGTCATGGATTCCACGTGTCTTGTATCGATTTGTGGCTCAGATCTNNNNNNNNNTGTCCTTCGTGCCGTCAGATTTTGGTAGTTTCTAGATGCGACAAGTGCGGCGGGATTCCAGCTCCCGCGACAACTACCGCTGCCGGGTCCAGCTCTATGCCGGCGCCGGATTGTGAAGCTAGATTAAAGGTAAGGGAGGATGATGGAAACAGATTCTTGCCATAG 564 0.5177 FRFLDELNSSSEDSTVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLPSPALASQTTTPPAAANKGVKKKILRSLPKLTATEESAVKFSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDLWLRSXXXCPSCRQILVVSRCDKCGGIPAPATTTAAGSSSMPAPDCEARLKVREDDGNRFLP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123360g00001 187 Pfam Ring finger domain 95 138 IPR001841 -
Trme123360g00001 187 CDD RING-H2_EL5-like 95 138 - -
Trme123360g00001 187 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 11 150 - -
Trme123360g00001 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Trme123360g00001 187 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Trme123360g00001 187 SMART ring_2 96 137 IPR001841 -
Trme123360g00001 187 SUPERFAMILY RING/U-box 77 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123360g00001 Trme-Chr123360 3 566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123360g00001 1 187 C3H Transcription Factor Family AT1G20823 57.360 1.15e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123360g00001 - - pvu:PHAVU_009G007400g 252.677