Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12323g00001 ATGAAGTTCATGAAACTTGGGACAAGGGCAGATACTTTCTACACTGAACAAGCTACCAGGACATTGACATCAGATATACCCTCAGACCTTGTAATACAAATCAATGATGTTACTTATCTGCTACACAAGTTTGCCCTTCTTCTGAAATGTGGACTCCTACAAAGGCTTTGCTATGATTCTAGTGATTCAGAGAGTGTCACTGTGGAGCTTCATGATATACCTGGAGGGGAAGATGCTTTTGAACTCTGTGCTAAGTTTTGTTACGGAATTTCGATCAACATTAGTGCTCATAACTTTGTATCTGCATTCTGTGCTGCCAAGTTCCTTAGAATGAACGATTCCGTTGAGAAGGGAAACTTTGTAGGAAAACTTGAGGCTTTCTTCAATTCATGCATTCTTGAAAGTTGGAAGGATCCCATTGCAACCCTTCAAACTACTTCCACATTACCAGAGTGGTCTGAGAATCTTG 469 0.4051 MKFMKLGTRADTFYTEQATRTLTSDIPSDLVIQINDVTYLLHKFALLLKCGLLQRLCYDSSDSESVTVELHDIPGGEDAFELCAKFCYGISINISAHNFVSAFCAAKFLRMNDSVEKGNFVGKLEAFFNSCILESWKDPIATLQTTSTLPEWSENL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12323g00001 156 Pfam BTB/POZ domain 25 117 IPR000210 GO:0005515
Trme12323g00001 156 Gene3D Potassium Channel Kv1.1; Chain A 12 119 IPR011333 -
Trme12323g00001 156 PANTHER OS12G0117600 PROTEIN 23 156 IPR043454 -
Trme12323g00001 156 SUPERFAMILY POZ domain 14 115 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12323g00001 Trme-Chr12323 57 716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12323g00001 28 156 EF-hand Containing Proteins AT3G44820 39.394 4.47e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme12323g00001 BTB 5.2e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12323g00001 - - tpra:123910822 313.923