Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123233g00001 AAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACTAGACTCTGGCTTGGTTCTTTCGCAACTGCGGAAGAAGCTGCAATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCTCACCTGCAACCACACTCCGTTTCGTCTATCAAAACTGGAAAGTTCAAGTGGTTGCCTTCAAAGAATTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAAAGACTACAAGAGTTTAAGCAGAATGCAGTTGCTGCAGGTCAATCATCGCTTTCTAGTTCATCTAATGATCCAAAGGCAGAAGAAATTCAGAATGTAGAGAGCAACAAGAATCATGCAGAAAATCCTCCAAAGGAAAAAGATGTTCAAACATCGGCGAATAAGATGCTTGGAGATTTTCAAGAGGAGAAACCACAGATAGACCTACATGAGTTTCTTCAACAGATGGGAATACTGAAAGAAGAAACACACTCGGAGCAAACTGAGAGTTCAGGAAGTTCAACAGTGCATGAAGCTGTGTCAAAAGATGATAATAATCAATTAGGAATATTTTCTGACAC 617 0.4003 KWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPHSVSSIKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVAAGQSSLSSSSNDPKAEEIQNVESNKNHAENPPKEKDVQTSANKMLGDFQEEKPQIDLHEFLQQMGILKEETHSEQTESSGSSTVHEAVSKDDNNQLGIFSDT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123233g00001 206 Gene3D AP2/ERF domain 1 48 IPR036955 GO:0003700|GO:0006355
Trme123233g00001 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 198 - -
Trme123233g00001 206 MobiDBLite consensus disorder prediction 180 206 - -
Trme123233g00001 206 ProSiteProfiles AP2/ERF domain profile. 1 47 IPR001471 GO:0003700|GO:0006355
Trme123233g00001 206 MobiDBLite consensus disorder prediction 106 121 - -
Trme123233g00001 206 MobiDBLite consensus disorder prediction 106 206 - -
Trme123233g00001 206 Pfam AP2 domain 1 39 IPR001471 GO:0003700|GO:0006355
Trme123233g00001 206 CDD AP2 1 49 IPR001471 GO:0003700|GO:0006355
Trme123233g00001 206 SMART rav1_2 1 53 IPR001471 GO:0003700|GO:0006355
Trme123233g00001 206 MobiDBLite consensus disorder prediction 122 140 - -
Trme123233g00001 206 SUPERFAMILY DNA-binding domain 1 48 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123233g00001 Trme-Chr123233 1 617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123233g00001 1 181 AP2-EREBP Transcription Factor Family AT3G57600 56.044 3.22e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme123233g00001 AP2 3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123233g00001 - - gmx:100801311 300.056