Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12322g00001 TCTCAGCATCCACACCTTCCACCAGGCTTTAGATTCCACCCCACTGATGAAGAACTAGTCGTTCACTACCTCAAGAGAAAAGCTGCATCAGCACCTCTTCCGGTAGCTATCATAGCAGATATTGATCTCTACAAATTCGACCCATGGGAACTCCCAAGTAAAGCAACTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCCCGGCCCAATAGGGCTGCAACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTAAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGTGTTAAAACTAATTGGATTATGCATGAGTATAGGCTTATCACTGATCACAATAATATTAATAATAATCATTCCTATAATGCAAGTTCAAAAACTCCTCTTCTGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCTTTGAGGCCCCTTCTCGGTCGTAGTTGCGGGGATCGAACCGTGGTTCTCCCTACTAAATTCAGCGTCAATCACCACTAG 582 0.4296 SQHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNINNNHSYNASSKTPLLPSDHPPNNNKKNSLRPLLGRSCGDRTVVLPTKFSVNHH 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12322g00001 193 SUPERFAMILY NAC domain 3 139 IPR036093 GO:0003677|GO:0006355
Trme12322g00001 193 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Trme12322g00001 193 ProSiteProfiles NAC domain profile. 6 152 IPR003441 GO:0003677|GO:0006355
Trme12322g00001 193 MobiDBLite consensus disorder prediction 142 170 - -
Trme12322g00001 193 FunFam NAC transcription factor 56 15 170 - -
Trme12322g00001 193 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trme12322g00001 193 MobiDBLite consensus disorder prediction 142 176 - -
Trme12322g00001 193 PANTHER NAC TRANSCRIPTION FACTOR 56 6 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12322g00001 Trme-Chr12322 1 863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12322g00001 10 170 NAC Transcription Factor Family AT3G15510 76.829 6.60e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme12322g00001 NAM 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12322g00001 - - aip:107624204 297.36