LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme1231g00001	ATGCACACAAGTATATTGTTTTTTCTAGTTGGTATCTCTATTTTGTTGCATGGCATTCAAGGTGCATGGACAGAGGAGCCAGGTTCATTGATATTGGGTTGTGGGTTGGATGAAAAGGGAGCCAAAGATGATGATGGAAGACAATGGAGTCCTGATAATAAGTTCTTGGCAGCGGAAGCTGGTTCAATCACATCTAAAGCCGCATACCAAGACCCTTCGCTGTCGGCTGTGGTTCCATACATGTCAGCTAGAGTTTTCACATCAGAAACAACATACAAATTTAATGTTAAACCTGATAAACGTTATTGGCTCAGGCTCCATTTTTATCCATCCCTTTATGGAAGTTTCAACCCATTAGATTCATATTTCTCGGTGGCAGCAAATGGGATTACCCTCCTCAGCAATTTCAGCGCTTACATCACTTGTGAGGCCCTCTCACAGGCTTACATTGATAGAGAGTACTCCCTTGCTCCTTTGAATTCAGATACTTTGACTCTTACATTTAAACCTTCTGACAAACAACATGGAGCTTTTGCTTTCGTCAATGGCATTCAGTTGATCCCAATGCCCGAGTTGTTTGACTCTGCTGCATTGGTCGGGTATCCCGACCAAAACGTAGACGTCAAAACCATGAGTTTGCAAACCATGTTTAGACTAAACGTTGGTGGGCAGTATGTGTCTCCAGCCCAAGATTCTGGCCTTTCGAGGATGTGGTATGATGACACACCTTACCTATATGGTGCATCCACTGGTGTCACCAACCAAGCTTCCAAGAATGTCCGAATCACCTACCCAAACATGCCACAATACATTGCTCCTGAAACTGTCTACTCCACATCAAGATCAATGGGANGTGATAAGAACGTTAACATGGGATACAACCTCACGTGGGTTTTCCAAGTTGATCCAAATTCCATGTACCTCGCGAGGTTGCATTTTTGTGATTATTATTATTCCAAGGTCAATGAGATTGTTTTCAATATCTTTGTCAACAACCAAACCGCACAGGCTCAAGCTGATGTTATTGCGTGGACAGGAGGTAAAGGCATGGCAACTTACAAGGATTTTGTGGTGTATGTCCAAGACGGTGAGGGGGCCGAGCAACTTTGGCTTGCACTGCATCCAGCACCTGAGACAATGCCAGAGTACTATGATGCCATACTCAATGGGGTAGAGATATTCAAGCTTAATGACACGGACTTGTCTGGCCCTAATCCTCAGCCTTCAGACATGCTTCTCGAAGATCAAGCAAAGGAAACGGGTTTCCAAACACACAGATCATATGATAAGAAAGCTGTCATTGGGGGAGCTGCTGGAGGCGCTGCAGGTGTTGCCTTTATGGCAGCAATATGCGTTGCTGTTTACCACAAGAAGAAAAGAGTTCCAGCGGCAGGGTCAGGGGGAGCCACACACACAAGTTGGCTTCCCATCTATGGAAATTCACACACAAATGGCAGTAAATCCACGTCTGGGAAGAGCATGGCCAGCGCAAACCTCGCTGCCATGGCTCAAGGTTTGTGTCGCTATTTTTCCTTGCAAGAGATAAAGCAAGCAACCAAAAATTTTGATGAGTCCAACGTTATTGGGGTTGGTGGATTTGGAAAGGTTTACAAGGGCGAAATTGATAACGGAGTGCTAGTGGCAATTAAGAGGTCAAATCCACAATCAGAACAAGGAGTCAATGAGTTCCAGACTGAGATAGAGATGCTTTCTAAGTTGAGACACAAGCATTTGGTGTCCTTGATTGGATTTTGTGAGGAAGATGATGAGATGTGCTTGGTTTATGACTACATGGCTCTTGGAACCTTTAGGGAACATTTGTATAAGGGCACCAAGCCTTTAAACATTTTAACTTGGAAGCAAAGATTGGAGATCTGCATTGGTGCTGCAAGAGGACTTCACTACCTTCACACAGGTGCCAAGTACACCATCATTCATAGAGATGTCAAAACAACAAATATTCTATTGGATGAAAACTGGAATGCCAAGGTATCAGATTTTGGGTTGTCAAAAACTGGTCCAGACTTGAATGCTGCTGGCCATGTTAGTACTGTGGTGAAGGGCAGTTTTGGCTACTTGGATCCCGAGTACTTTAGGAGGCAACAGTTGACTGAAAAGTCTGATGTCTACTCATTTGGGGTCGTCCTCTTTGAAGCCCTTTGTGCCAGGCCTGTTCTAAATCCTAGTCTTCCAAAAGAACAAGTTAGTCTTGCGGAATGGGCATTGCTCTGCAACCAAAAAGGAACGCTGGAGGATATTATTGACCCCAATCTCAAGGGAACAATAAATCCAGAAAGTTTGAAGAAGTTTGTGGACACGGCTGAAAAGTGTTTGTCTGATCACGGAACTGATCGTCCGTCCATGAATGATCTGTTGTGGAATCTAGAATTTGCTCTCAACCTGCAAGAAAACAAGGATGGTTCAACTAACTCTGCAGCTCGAACTGATGAAAATGAGTTTGAAGAAATAAACTTAGGAGACAAAGAAATGGCAAAACATTATAAGAACCTGAGCCTTGGAAGTCAGCATG	2530	0.4387	MHTSILFFLVGISILLHGIQGAWTEEPGSLILGCGLDEKGAKDDDGRQWSPDNKFLAAEAGSITSKAAYQDPSLSAVVPYMSARVFTSETTYKFNVKPDKRYWLRLHFYPSLYGSFNPLDSYFSVAANGITLLSNFSAYITCEALSQAYIDREYSLAPLNSDTLTLTFKPSDKQHGAFAFVNGIQLIPMPELFDSAALVGYPDQNVDVKTMSLQTMFRLNVGGQYVSPAQDSGLSRMWYDDTPYLYGASTGVTNQASKNVRITYPNMPQYIAPETVYSTSRSMGXDKNVNMGYNLTWVFQVDPNSMYLARLHFCDYYYSKVNEIVFNIFVNNQTAQAQADVIAWTGGKGMATYKDFVVYVQDGEGAEQLWLALHPAPETMPEYYDAILNGVEIFKLNDTDLSGPNPQPSDMLLEDQAKETGFQTHRSYDKKAVIGGAAGGAAGVAFMAAICVAVYHKKKRVPAAGSGGATHTSWLPIYGNSHTNGSKSTSGKSMASANLAAMAQGLCRYFSLQEIKQATKNFDESNVIGVGGFGKVYKGEIDNGVLVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMALGTFREHLYKGTKPLNILTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWNAKVSDFGLSKTGPDLNAAGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPSLPKEQVSLAEWALLCNQKGTLEDIIDPNLKGTINPESLKKFVDTAEKCLSDHGTDRPSMNDLLWNLEFALNLQENKDGSTNSAARTDENEFEEINLGDKEMAKHYKNLSLGSQH	843

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme1231g00001	843	Gene3D	Transferase(Phosphotransferase) domain 1	598	822	-	-
	Trme1231g00001	843	Gene3D	Phosphorylase Kinase; domain 1	482	597	-	-
	Trme1231g00001	843	Gene3D	-	32	189	-	-
	Trme1231g00001	843	Gene3D	-	211	397	-	-
	Trme1231g00001	843	ProSiteProfiles	Protein kinase domain profile.	522	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme1231g00001	843	Pfam	Malectin-like domain	33	395	IPR024788	-
	Trme1231g00001	843	Pfam	Protein kinase domain	523	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme1231g00001	843	ProSitePatterns	Protein kinases ATP-binding region signature.	528	550	IPR017441	GO:0005524
	Trme1231g00001	843	FunFam	FERONIA receptor-like kinase	29	190	-	-
	Trme1231g00001	843	SUPERFAMILY	Protein kinase-like (PK-like)	501	798	IPR011009	-
	Trme1231g00001	843	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	644	656	IPR008271	GO:0004672\|GO:0006468
	Trme1231g00001	843	FunFam	receptor-like protein kinase FERONIA	484	597	-	-
	Trme1231g00001	843	SMART	serkin_6	522	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme1231g00001	843	FunFam	FERONIA receptor-like kinase	211	397	-	-
	Trme1231g00001	843	PANTHER	OS07G0166700 PROTEIN	506	802	IPR045272	GO:0004714\|GO:0006468
	Trme1231g00001	843	CDD	STKc_IRAK	528	796	-	-
	Trme1231g00001	843	FunFam	Receptor-like protein kinase FERONIA	598	813	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme1231g00001	Trme-Chr1231	727	3256	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme1231g00001	30	827	Receptor kinase-like Gene Family	AT3G51550	55.037	0.0	834

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trme1231g00001		Malectin_like	2.6e-36	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme1231g00001	-		-	tpra:123889663	1683.31