Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123187g00001 ATGCTCGATTCGAACTCCAACTCCGAACCTCGCCGAGTCGAAACGAGTCAATCAGACACAGCGGCGATTCTCTTCTCTTCGGGAACAACTGGAAAAATTAAAGGCGTGTTGTTAACTCATCGTAACCTTATTGCGTTGATNNNNNNTNNNNNNNNNNTNNNNNNNNNNTATGATGACGGCGTTGTAAATGAACCGCATCCGGTGTCGCTGTTTCCGCTTCCTCTTTTTCATGTGTTTGGATTTTTTATGTTGGTGAGGGCTTTGGCTATGGGGGAGACACTGGTGTTGATGCAGAGGTTTGATTTTGAAGGGATGTTGAAGGCTGTGCAGAAGTATAGGATTACTTATATGCCTGTGTCGCCGCCGTTGGTTACGGCGTTTGCTAAGTCAGAGTTGGTGAAGAAATATGATCTTAGTTCGATTCGGTTGTTGGGGTCCGGTGGCGCTCCGCTTGGTAAGGAAGTTGCGGAGAGCTTCAAAACCAAATTCCCCAATGTGGAAATTGTGCAG 510 0.4451 MLDSNSNSEPRRVETSQSDTAAILFSSGTTGKIKGVLLTHRNLIALXXXXXXXXXXYDDGVVNEPHPVSLFPLPLFHVFGFFMLVRALAMGETLVLMQRFDFEGMLKAVQKYRITYMPVSPPLVTAFAKSELVKKYDLSSIRLLGSGGAPLGKEVAESFKTKFPNVEIVQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123187g00001 170 ProSitePatterns Putative AMP-binding domain signature. 23 34 IPR020845 -
Trme123187g00001 170 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 166 - -
Trme123187g00001 170 Pfam AMP-binding enzyme 10 169 IPR000873 -
Trme123187g00001 170 Gene3D - 3 170 - -
Trme123187g00001 170 SUPERFAMILY Acetyl-CoA synthetase-like 8 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123187g00001 Trme-Chr123187 39 548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123187g00001 5 170 Monolignol Biosynthesis Gene Families AT5G63380 60.843 2.16e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123187g00001 K01904 - gmx:100804044 241.506