Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123141g00001 ATGGCTGTGGACATTTGGTCTGTTGCGTGCATTTTCGCTGAACTTGTCACCAAGCAAGCACTATTTCCTGGTGATTCTGAGCTGCAACAACTCCTCCACATATTCAGGCTGTTGGGGACTCCTAATGAAGAGATGTGGCCAGGTGTTAGTAAACTAATGAACTGGCATGAGTACCCTCAGTGGAGCCCTCAAAGTCTTTCAAAGGCTCAAATGCTGCAATATGAACCTGCCAAGCGGATTTCTGCAAAGAAAGCAATGGAACATCCTTACTTTGATGACCTGGACAAGACCAATCTTTAG 300 0.4567 MAVDIWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEMWPGVSKLMNWHEYPQWSPQSLSKAQMLQYEPAKRISAKKAMEHPYFDDLDKTNL 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123141g00001 99 Pfam Protein kinase domain 2 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme123141g00001 99 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme123141g00001 99 PANTHER CELL DIVISION PROTEIN KINASE 2 92 - -
Trme123141g00001 99 SUPERFAMILY Protein kinase-like (PK-like) 2 95 IPR011009 -
Trme123141g00001 99 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme123141g00001 Trme-Chr123141 31 540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123141g00001 2 99 Core Cell Cycle Gene Families AT1G20930 73.214 2.65e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trme123141g00001 Pkinase 5.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123141g00001 K07760 - zju:107416003 186.037