Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme123056g00001 ATGACTGAAGAAAGAACTCATGCTGCTGCTATTGCTGCTGCCGCTGATAATAATAATAATACTCACATTTTCAAGAGAGATTTTGAACCTGTTGTTGCTCTTAGTGATGGTGGAAATGGAAACCCCATTTATGGTCTTAGAGAGAATCCCAAGAAAACAATCAAGTTTGTGCATTCTCATAATCATGTTGTTGCCGCTGCCGCCGCTGCAACCACTGCATTGGAACATGAAATGATCAAATTCTGCAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTTTGTGGTCACATGGCTTCTCATTCTGAGAAAGAGAAAAAGATCAACAAGTTTTATCAAATGGAGGATACTCAATCTGATGACACTGATGATGATGATGATGATACTTGTGTTGTTGCTGCTTCAACAATGAATCTAAGGAAAAATAAGAGAAGAATTAGGAACAACAAGAGGTTGCTAGGTGTTTGA 471 0.3843 MTEERTHAAAIAAAADNNNNTHIFKRDFEPVVALSDGGNGNPIYGLRENPKKTIKFVHSHNHVVAAAAAATTALEHEMIKFCKECGKGFPSLKALCGHMASHSEKEKKINKFYQMEDTQSDDTDDDDDDTCVVAASTMNLRKNKRRIRNNKRLLGV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme123056g00001 156 Gene3D Classic Zinc Finger 81 137 - -
Trme123056g00001 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Trme123056g00001 156 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 147 - -
Trme123056g00001 156 Pfam C2H2-type zinc finger 82 104 - -
Trme123056g00001 156 SUPERFAMILY beta-beta-alpha zinc fingers 79 106 IPR036236 -
Trme123056g00001 156 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme123056g00001 32 147 C2H2 Transcription Factor Family AT1G26610 38.793 5.64e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme123056g00001 zf-C2H2_6 7.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme123056g00001 - - psat:127106931 129.798