Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1230180g00001 GTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTAGAGGGTGCAAACCAGAAAGTCCCTGCAGAACTTC 151 0.4702 VEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPAEL 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1230180g00001 50 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 43 IPR027417 -
Trme1230180g00001 50 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 50 - -
Trme1230180g00001 50 Gene3D - 1 50 IPR027417 -
Trme1230180g00001 50 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 50 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1230180g00001 Trme-Chr1230180 11 161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1230180g00001 2 50 Eukaryotic Initiation Factors Gene Family AT1G72730 32.653 1.02e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1230180g00001 K12823 - csin:114277250 90.8929