Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122978g00001 TTTTGGCAGTTTAAACTCTGCAAGGTTCGATCTGTTCAATTCGGGCAGAAGGGTATTCCCTATTTGAACACCTATGATGGTCGCACCATCCGCTATCCAGACCCACTAATTAAGGCTAATGACACCATCAAACTTGACCTTGAAAACAACAAGATCACTGATTTTATCAAGTTTGACGTGGGGAATGTTGTCATGGTTACTGGAGGAAGGAATAGAGGCCGTGTTGGTGTCATCAAGAACAGAGAAAAACATAAAGGAACTTTCGAGACTATCCACGTCCAGGATGCAAGTGGTCATGAGTTTGCAACTCGGTTGGGCAATGTCTTCACTATTGGCAAAGGAACAAAGCCTTGGGTGTCTCTTCCTAAAGGCAAAGGTATCAAGTTGACTGTTATTGAAGAGGCTAGAAAGAGGCAGGCTGCTCAAAATGTAACTGCTGCTTAA 444 0.4347 FWQFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDASGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRQAAQNVTAA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122978g00001 147 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 3 137 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme122978g00001 147 FunFam 40S ribosomal protein S4 58 128 - -
Trme122978g00001 147 Pfam Ribosomal family S4e 3 52 IPR013845 -
Trme122978g00001 147 Pfam KOW motif 60 93 IPR005824 -
Trme122978g00001 147 FunFam 40S ribosomal protein S4 5 55 - -
Trme122978g00001 147 Pfam 40S ribosomal protein S4 C-terminus 95 141 IPR032277 -
Trme122978g00001 147 Gene3D - 5 55 IPR038237 -
Trme122978g00001 147 Gene3D - 58 128 IPR014722 -
Trme122978g00001 147 CDD KOW_RPS4 58 112 IPR041982 -
Trme122978g00001 147 SMART kow_9 57 84 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122978g00001 Trme-Chr122978 2 445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122978g00001 3 145 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 88.112 9.32e-94 269