Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme122945g00001 AAGAAGATCAAGGTTCCTCGTCTGGTTCAAATGCATTCTAATGAGATGCACGACATTCAAGAGGCCCATGCTGGCCAAATAGTTGCTGTAACTGGTGTTGATTGTGCATCAGGAGATACTTTTACCGATGGGTCAGTTAAATACACAATGACTTCTATGAATATTCCTGAGCCCGTGATGTCATTAGCTGTACAACCAGTCTCAAAAGATTCTGGAGGGAAATTTTCAAAAGCTTTGAACCGCTTTCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGAGATTTATGTTGAACGCATTAAGAATGAGTACAAGGTTGAAACTTCAGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACTCAACGTGCTGGTTTTGATTATTTACATAAGAAGCAATCTGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATTGAACCACTTCCTGCTGGGTCAGAAACTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAAGCTATTCCATCAAATTTTATCCCTGCGATTGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGG 617 0.4165 KKIKVPRLVQMHSNEMHDIQEAHAGQIVAVTGVDCASGDTFTDGSVKYTMTSMNIPEPVMSLAVQPVSKDSGGKFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLEIYVERIKNEYKVETSVGKPRVNFRETVTQRAGFDYLHKKQSGGQGQYGRVIGYIEPLPAGSETKFEFENMLVGQAIPSNFIPAIEKGFKEAANSG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme122945g00001 206 SUPERFAMILY Translation proteins 2 53 IPR009000 -
Trme122945g00001 206 FunFam Elongation factor G 59 135 - -
Trme122945g00001 206 Gene3D Translation factors 1 61 - -
Trme122945g00001 206 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 206 - -
Trme122945g00001 206 Pfam Elongation Factor G, domain III 55 129 IPR041095 -
Trme122945g00001 206 Pfam Elongation factor G, domain IV 130 206 IPR005517 GO:0005525
Trme122945g00001 206 SUPERFAMILY Ribosomal protein S5 domain 2-like 130 206 IPR020568 -
Trme122945g00001 206 SUPERFAMILY EF-G C-terminal domain-like 53 130 IPR035647 -
Trme122945g00001 206 CDD EFG_III 56 131 IPR009022 -
Trme122945g00001 206 Gene3D - 136 206 IPR014721 -
Trme122945g00001 206 Gene3D Elongation Factor G (Translational Gtpase), domain 3 62 135 - -
Trme122945g00001 206 SMART EFG_IV_2 131 206 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme122945g00001 Trme-Chr122945 1 617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme122945g00001 5 142 Eukaryotic Initiation Factors Gene Family AT1G56070 27.815 8.35e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme122945g00001 K02355 - gmx:100783315 388.652