Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1229153g00001 ATGATTAAGGATGCAATTGTGACTCTGAAAGAAAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACACAAACAACTTCCTTCAAATTTCAAGAAGCTATTACTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAG 169 0.3432 MIKDAIVTLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVK 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1229153g00001 56 Pfam linker histone H1 and H5 family 1 56 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1229153g00001 56 SMART h15plus2 1 56 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1229153g00001 56 Gene3D - 1 56 IPR036388 -
Trme1229153g00001 56 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 56 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme1229153g00001 56 SUPERFAMILY "Winged helix" DNA-binding domain 1 56 IPR036390 -
Trme1229153g00001 56 PANTHER HISTONE H1 1 55 - -
Trme1229153g00001 56 CDD H15 1 56 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1229153g00001 Trme-Chr1229153 12 180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1229153g00001 1 56 Single Myb Histone (SMH) Gene Family AT1G49950 44.643 2.96e-08 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1229153g00001 K11275 - vvo:131633962 98.5969