Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12282g00001 AAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTGATGAGCTTGTTGAGCCTTCCAAACGATCATTCAGACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCATAGCCTTGTGGAGTGTTCAGTGTCCAACACTGGCAGACACCGACACATGTGGCACATCTAATAATTCCTTTTTCTTGGATTATTACCGGTGTCGACATGTTAGTGTCTATGAAGTGCTGACACACGCTGGCCACGACACTGTGTCACTGTTACCGATTTTCCCGTCTCAGTCACTGTTTGATAGTTTCCTTTGTTTTGGGACTTATATATATACACCTTTTACAGCATTGGCTATGGGGGAAACTTTGGCACTTGCACCAGACCTTTTGAAAGGGAATCAAATGGTTTCATCAATTTTTGATATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAATTGATGACAGTGGAAGGAACAATTGAGCTAAGAAGGATCAATTTTAGCTACCCTTCAAGACCAAACATTGTTATTTTTAATGATTTCAATCTAATAGTTCCTTCAGGGAAGAGTCTTGCCTTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTAGATTTTATGATCCTACATCTGGGAAGGTGATGATTGATGGTTGCGGTTACACTGCGAATTTTGATACCGCGGATGAAATAGTTGCAGCTGCGATTGCGGTTGCGATCAATGTTGGATATATGTAG 882 0.4002 KLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYADELVEPSKRSFRRGQIAGIFYGISQFFIFSSYGIALWSVQCPTLADTDTCGTSNNSFFLDYYRCRHVSVYEVLTHAGHDTVSLLPIFPSQSLFDSFLCFGTYIYTPFTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELMTVEGTIELRRINFSYPSRPNIVIFNDFNLIVPSGKSLALVGQSGSGKSSIISLILRFYDPTSGKVMIDGCGYTANFDTADEIVAAAIAVAINVGYM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12282g00001 293 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 12 267 IPR039421 -
Trme12282g00001 293 Pfam ABC transporter transmembrane region 10 83 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme12282g00001 293 Pfam ABC transporter 222 266 IPR003439 GO:0005524
Trme12282g00001 293 Gene3D ABC transporter type 1, transmembrane domain 7 90 IPR036640 GO:0005524|GO:0016020
Trme12282g00001 293 Gene3D ABC transporter type 1, transmembrane domain 153 192 IPR036640 GO:0005524|GO:0016020
Trme12282g00001 293 SUPERFAMILY ABC transporter transmembrane region 5 84 IPR036640 GO:0005524|GO:0016020
Trme12282g00001 293 Gene3D - 193 266 IPR027417 -
Trme12282g00001 293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 83 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme12282g00001 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12282g00001 Trme-Chr12282 181 1505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12282g00001 1 266 Calmodulin-binding Proteins AT2G36910 40.149 8.86e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12282g00001 K05658 - gmx:100809752 303.138